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[DO NOT MERGE] test new character-level diffs #11299

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4 changes: 2 additions & 2 deletions .github/actions/get-shards/action.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -26,10 +26,10 @@ runs:
java-version: "17"

- name: Set up nf-test
uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
uses: nf-core/setup-nf-test@main # v2
with:
version: ${{ env.NFT_VER }}
install-pdiff: true
install-fast-diff: true

- name: Get number of shards
id: shards
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4 changes: 2 additions & 2 deletions .github/actions/nf-test-action/action.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -37,10 +37,10 @@ runs:
python-version: "3.14"

- name: Set up nf-test
uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
uses: nf-core/setup-nf-test@main # v2
with:
version: "${{ env.NFT_VER }}"
install-pdiff: true
install-fast-diff: true

- name: Set up apptainer
if: contains(inputs.profile, 'singularity')
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4 changes: 2 additions & 2 deletions .github/workflows/update-gpu-snapshot.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -71,10 +71,10 @@ jobs:
python-version: "3.14"

- name: Set up nf-test
uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
uses: nf-core/setup-nf-test@main # v2
with:
version: "${{ env.NFT_VER }}"
install-pdiff: true
install-fast-diff: true

- name: Update gpu snapshot
id: update-gpu-snapshot
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4 changes: 2 additions & 2 deletions .github/workflows/update-sentieon-snapshot.yml
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Expand Up @@ -74,10 +74,10 @@ jobs:
python-version: "3.14"

- name: Set up nf-test
uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
uses: nf-core/setup-nf-test@main # v2
with:
version: "${{ env.NFT_VER }}"
install-pdiff: true
install-fast-diff: true

# Set up secrets
- name: Set up Nextflow secrets
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2 changes: 1 addition & 1 deletion modules/nf-core/multiqc/main.nf
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Expand Up @@ -19,7 +19,7 @@ process MULTIQC {

when:
task.ext.when == null || task.ext.when

//trigger test
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ? "--filename ${task.ext.prefix}.html" : ''
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17 changes: 5 additions & 12 deletions modules/nf-core/multiqc/tests/main.nf.test.snap
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Expand Up @@ -175,7 +175,7 @@
[
"MULTIQC",
"multiqc",
"1.34"
"1.33"
]
]
}
Expand All @@ -195,7 +195,7 @@
"id": "FASTQC"
},
[
".stub:md5,d41d8cd98f00b204e9800998ecf8427e"
".stub:md5,sadd8cd98f00b233e9800998ecf8427e"
]
]
],
Expand All @@ -205,7 +205,7 @@
"id": "FASTQC"
},
[
".stub:md5,d41d8cd98f00b204e9800998ecf8427e"
".stub:md5,d41d8cd9sf0b204e9800998ecf8427e"
]
]
],
Expand All @@ -214,16 +214,9 @@
{
"id": "FASTQC"
},
"multiqc_report.html:md5,d41d8cd98f00b204e9800998ecf8427e"
"multiqc_report.html:md5,d41d8cd98fss00b204e9800998ecf8427e"
]
],
"versions": [
[
"MULTIQC",
"multiqc",
"1.34"
]
]
}
],
"timestamp": "2026-02-26T15:14:39.789193051",
Expand Down Expand Up @@ -419,4 +412,4 @@
"nextflow": "25.10.4"
}
}
}
}
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