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Pull requests: nf-core/modules

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190 Open 8,107 Closed
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Pull requests list

fix(trimgalore): clean stale outputs on same-workdir retry
#11308 opened Apr 25, 2026 by pinin4fjords Member Loading…
added pcne module
#11307 opened Apr 25, 2026 by riccabolla • Draft
17 tasks
nf-core-module-dev claude init attempt for hifiadapterfilt size/m
#11306 opened Apr 25, 2026 by vagkaratzas Contributor Loading…
12 of 17 tasks
1
[Won't merge] Codex checkpoint - to compare against Claude size/m
#11305 opened Apr 25, 2026 by vagkaratzas Contributor • Draft
17 tasks
Update KRAKENUNIQ_BUILD to make input taxonomy files properly compliant size/m
#11304 opened Apr 25, 2026 by jfy133 Member Loading…
17 tasks
bots pair programming social experiment - deletion of duplicate logic subworkflows + conversation size/l
#11303 opened Apr 24, 2026 by vagkaratzas Contributor • Draft
Update dotnet monorepo size/xs
#11300 opened Apr 24, 2026 by renovate Bot Loading…
2 tasks
[DO NOT MERGE] test new character-level diffs
#11299 opened Apr 24, 2026 by mashehu Contributor Loading…
Add new module gatk4/cleansam size/l
#11288 opened Apr 24, 2026 by sofiademmou Contributor Loading…
12 of 17 tasks
1
New module: modkit/extract/calls
#11286 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
New module: modkit/extract/full
#11285 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
New module: modkit/validate
#11284 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
New module: modkit/entropy
#11283 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
Migrate hlala to topic channels and bump version
#11282 opened Apr 23, 2026 by jonasscheid Contributor Loading…
10 of 14 tasks
2
Fix redundant containers size/xs
#11276 opened Apr 23, 2026 by SPPearce Contributor Loading…
3
Add module: Percolator
#11273 opened Apr 23, 2026 by julianu Contributor Loading…
12 of 17 tasks
9
Improve mirtop stats script with GFF check
#11262 opened Apr 22, 2026 by d-jch Contributor Loading…
RFC: document GPU container variants in meta.yml (ribodetector) size/s
#11259 opened Apr 22, 2026 by pinin4fjords Member • Draft
bots add new module for svdss/index size/m
#11253 opened Apr 21, 2026 by vagkaratzas Contributor Loading…
13 of 17 tasks
1
16
fix seqkit sample for paired-end reads size/s
#11249 opened Apr 21, 2026 by bounlu Contributor Loading…
1
Make rundbcan/easysybstract synteny_pdf as optional, version topics upgrade, bump version size/l
#11242 opened Apr 20, 2026 by jfy133 Member • Draft
17 tasks
Centrifuger quant
#11234 opened Apr 20, 2026 by haris18s Contributor Loading…
1 of 7 tasks
22
Migrate missing nf-core/differentialabundance modules to Seqera containers
#11232 opened Apr 20, 2026 by atrigila Contributor Loading…
8 tasks done
2
add quilt2 sbwf
#11223 opened Apr 19, 2026 by atrigila Contributor Loading…
17 tasks
5
feat: add dorado/aligner module
#11222 opened Apr 18, 2026 by sahuno • Draft
11 tasks done
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