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Pull requests: nf-core/modules

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Pull requests list

Added nf-test to explicitly check detection of PacBio adapters
#5698 opened May 27, 2024 by GallVp Loading…
3 of 17 tasks
Update pre-commit hook renovatebot/pre-commit-hooks to v37.377.7
#5697 opened May 26, 2024 by renovate bot Loading…
2 tasks
Bump Sambamba to 1.0.1
#5695 opened May 26, 2024 by scwatts Loading…
1 of 17 tasks
1
Update interproscan
#5688 opened May 24, 2024 by mahesh-panchal Loading…
14 of 17 tasks
3
Add new module: RTN/TNA new module Adding a new module
#5687 opened May 24, 2024 by mribeirodantas • Draft
1 of 17 tasks
@mribeirodantas
Fix memory unit in germlinecnvcaller modules
#5686 opened May 23, 2024 by ramprasadn Loading…
17 tasks
3
bcftools isec input can be bcf or bcf.gz as well as vcf.gz
#5685 opened May 23, 2024 by RuthEberhardt Loading…
17 tasks
Convert ngscheckmate/patterngenerator to nf-test
#5681 opened May 23, 2024 by SPPearce Loading…
sageproteomics/sage
#5677 opened May 22, 2024 by dgemperline-lilly Loading…
10 of 17 tasks
5
First Neuroimaging module : denoising/nlmeans
#5673 opened May 22, 2024 by AlexVCaron Loading…
9 of 17 tasks
1
12
[DRAFT] Add CAT_pack download module
#5668 opened May 22, 2024 by pmoradi2023 Loading…
17 tasks
New module FQ2BAMFAST
#5647 opened May 21, 2024 by mribeirodantas Loading…
9 of 17 tasks
2
Add GMM-Demux
#5641 opened May 21, 2024 by mari-ga Loading…
10 of 17 tasks
15
fix issue #5612 - boolean param to optionally log skipped fastqs
#5638 opened May 21, 2024 by glichtenstein Loading…
2 of 17 tasks
@glichtenstein
4
Add module muse/call and Dockerfile
#5630 opened May 17, 2024 by famosab Loading…
8 of 17 tasks
1
2
Add module muse/sump
#5629 opened May 17, 2024 by famosab Loading…
8 of 17 tasks
1
2
Bump fgbio versions and swap to nftest Ready for Review
#5624 opened May 17, 2024 by SPPearce Loading…
42
Iqtree version bump and output fix
#5618 opened May 16, 2024 by tstoeriko Loading…
6 of 7 tasks
1
@tstoeriko
18
Added tsebra
#5611 opened May 15, 2024 by GallVp Loading…
12 of 17 tasks
1
3
[FIX] Make output compression in TCOFFEE/ALIGN more robust
#5609 opened May 15, 2024 by lrauschning Loading…
Add openms IDMapper module WIP Work in progress
#5600 opened May 14, 2024 by rolivella • Draft
17 tasks
Added fastq_bwa_mem_samblaster Ready for Review
#5582 opened May 9, 2024 by GallVp Loading…
10 of 17 tasks
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.5
#5581 opened May 9, 2024 by renovate bot Loading…
2 tasks
Update ghcr.io/devcontainers/features/docker-in-docker Docker tag to v2.11
#5580 opened May 9, 2024 by renovate bot Loading…
2 tasks
Pin dependencies
#5579 opened May 9, 2024 by renovate bot Loading…
2 tasks
1
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