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Pull requests: nf-core/modules

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Pull requests list

Migrate ska/distance to topics size/m
#12778 opened Aug 24, 2026 by mribeirodantas Member Loading…
1 of 17 tasks
1
@mribeirodantas
Migrate snpsites to topics size/s
#12777 opened Aug 23, 2026 by mribeirodantas Member Loading…
1 of 17 tasks
1
@mribeirodantas
sniffles: bump version 2.7.3 -> 2.8.0
#12776 opened Aug 23, 2026 by aksenia Contributor Loading…
2 tasks done
@aksenia
Update fastaguard to 0.7.0
#12775 opened Aug 23, 2026 by ehsanestaji Contributor Loading…
8 of 9 tasks
feat: add split and merge modules and bump snapshots for latest versions
#12774 opened Aug 22, 2026 by chaitanyakasaraneni Contributor Loading…
12 of 17 tasks
Custom eigenvectotsv
#12773 opened Aug 22, 2026 by dbaku42 Contributor Loading…
Support save_domtblout in fasta_hmmsearch_rank_fastas
#12772 opened Aug 21, 2026 by erikrikarddaniel Member Loading…
8 of 14 tasks
Migrate custom/pcaclustering, custom/clustermetrics and custom/clustervisualization
#12771 opened Aug 21, 2026 by dbaku42 Contributor Loading…
4 tasks done
@dbaku42
Hyphy meme
#12769 opened Aug 21, 2026 by leapicard Contributor Loading…
11 of 17 tasks
1
5
Update to topic sigprofiler Do not merge yet
#12764 opened Aug 20, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
1
Migrate starfusion/build to topics size/l
#12748 opened Aug 18, 2026 by mribeirodantas Member Loading…
17 tasks
1
@mribeirodantas
16
Add basic subworkflow for unzipping and indexing fasta Ready for Review size/m
#12663 opened Aug 12, 2026 by DLBPointon Contributor Loading…
6
Remove fixed UMI-tools seeds and fix UMICollapse jar discovery Do not merge yet
#12662 opened Aug 12, 2026 by pinin4fjords Member Loading…
3
Add STRAGLR module
#12644 opened Aug 10, 2026 by lukejroche Loading…
2 tasks
1
1
Update to topic qualimap
#12625 opened Aug 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
6
Provide .fna support for pbmm2/align
#12602 opened Aug 6, 2026 by stvdsomp Loading…
6 tasks done
4
fix probe-set inclusion assertion size/m
#12601 opened Aug 6, 2026 by fmalmeida Contributor Loading…
1
@fmalmeida
3
Update to topic phyloflash Do not merge yet
#12577 opened Aug 4, 2026 by LouisLeNezet Contributor • Draft
17 tasks
1
@LouisLeNezet
1
Add subworkflow for gridss somatic structural variant calling Ready for Review
#12574 opened Aug 4, 2026 by imsarath Contributor Loading…
14 of 17 tasks
1
@imsarath
8
Swap repeatmodeler to topics conda-fail size/m
#12513 opened Aug 3, 2026 by SPPearce Contributor • Draft
17 tasks
2
Swap repeatmasker to topics conda-fail size/m
#12506 opened Aug 3, 2026 by SPPearce Contributor • Draft
2
updated module: xengsort/index Ready for Review
#12494 opened Aug 2, 2026 by LeonHornich Contributor Loading…
10 of 13 tasks
15
Update nvcr.io/nvidia/tensorflow Docker tag to v20.12 size/xs
#12488 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Update dependency prettier to v3.9.6 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
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