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50 Open 48 Closed
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Issues list

Quast to get GC contig of each contig/chromosome
#147 opened Apr 15, 2025 by chriswyatt1
Check if genome contains mitochondrion
#146 opened Apr 15, 2025 by chriswyatt1
Error/Warning messages
#145 opened Apr 14, 2025 by FernandoDuarteF
1
TIDK apriori input options
#143 opened Apr 11, 2025 by chriswyatt1
Decide which programs will be summarised in final tree (annotation mode)
#142 opened Apr 11, 2025 by chriswyatt1
Add a custom tree for genomeonly mode
#141 opened Apr 11, 2025 by chriswyatt1
Genome only mode need more memory
#140 opened Apr 10, 2025 by chriswyatt1
Only allow val(meta), path() as output channels
#139 opened Apr 8, 2025 by FernandoDuarteF
Change refseq field to ncbi
#138 opened Apr 8, 2025 by FernandoDuarteF
Add FASTQC
#137 opened Apr 8, 2025 by FernandoDuarteF
Work out all the different test
#136 opened Apr 8, 2025 by FernandoDuarteF
CREATEPATH module is overkill
#135 opened Apr 8, 2025 by FernandoDuarteF
@chriswyatt1
2
Make the flag for BUSCO lineage compulsory?
#133 opened Apr 7, 2025 by chriswyatt1
groovyjarjarantlr4.v4.runtime.LexerNoViableAltException
#123 opened Mar 26, 2025 by chriswyatt1
Run BUSCO on both --genome and --protein modes
#122 opened Mar 26, 2025 by FernandoDuarteF
BUSCO lineage selection for multiple groups enhancement New feature or request
#117 opened Feb 17, 2025 by FernandoDuarteF
@BenjaminATaylor
1
Local module envs and tests
#116 opened Feb 3, 2025 by chriswyatt1
Add option to check only coding RNA stats in GFF files
#115 opened Jan 31, 2025 by FernandoDuarteF
Pull metadata from NCBI
#114 opened Jan 31, 2025 by FernandoDuarteF
1
Complete usage and output docs for web documentation Improvements or additions to documentation
#113 opened Jan 30, 2025 by chriswyatt1
Add chromosome number for each genome enhancement New feature or request
#112 opened Jan 30, 2025 by chriswyatt1
3
Add local test enhancement New feature or request
#111 opened Jan 29, 2025 by FernandoDuarteF
2
Add a single table output with stats
#108 opened Jan 7, 2025 by chriswyatt1
Removed genes with undefined strands in gene_overlaps.R
#105 opened Dec 11, 2024 by FernandoDuarteF
Single module for BUSCO ideograms enhancement New feature or request
#104 opened Dec 9, 2024 by FernandoDuarteF
@FernandoDuarteF
ProTip! What’s not been updated in a month: updated:<2025-03-16.