Skip to content

Issues: nextstrain/seasonal-flu

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 49 Closed
23 Open 49 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add HA1 and NA mutation counts enhancement New feature or request
#201 opened Dec 19, 2024 by huddlej
Properly handle CSV-like TSVs
#199 opened Dec 6, 2024 by joverlee521
Update example GISAID workflow to support multiple input files enhancement New feature or request
#190 opened Oct 23, 2024 by huddlej
Update and standardize Nextclade datasets for all lineages and gene segments enhancement New feature or request
#186 opened Oct 15, 2024 by huddlej
@huddlej
Add GISAID isolate ID to acknowledgments download enhancement New feature or request
#178 opened Sep 5, 2024 by joverlee521
3 tasks done
1
4
Exclude sequences with unusual collection dates enhancement New feature or request
#175 opened Aug 6, 2024 by joverlee521
2
Rename master to main enhancement New feature or request
#169 opened Jun 11, 2024 by genehack
Use a narrative template file to stub out a date-specific narrative for a given set of dated builds
#163 opened May 13, 2024 by huddlej
Use metadata from NA segment in joined metadata when HA segment isn't available bug Something isn't working
#161 opened Apr 15, 2024 by huddlej
Automate deployment of private nextflu.org site enhancement New feature or request
#159 opened Apr 5, 2024 by joverlee521
Filter low-quality sequences by Nextclade QC status enhancement New feature or request
#144 opened Jan 30, 2024 by huddlej
Use Nextclade to assign clade labels in main phylogenetic workflow enhancement New feature or request
#131 opened Nov 28, 2023 by huddlej
Automate monthly reports enhancement New feature or request
#130 opened Nov 27, 2023 by huddlej
9 of 12 tasks
@huddlej @j23414
2
Revisit deploy-private-nextflu Netlify CLI version pin
#127 opened Nov 17, 2023 by joverlee521
1
Assign clades to nodes via tabular metadata enhancement New feature or request
#91 opened Nov 22, 2022 by uee9
Explore use of IQ-TREE's constraint tree option enhancement New feature or request
#79 opened Mar 23, 2022 by joverlee521
1
Identify "prototype virus" for each putative clade enhancement New feature or request
#66 opened Aug 31, 2021 by huddlej
Annotate more granular clades on nextflu site enhancement New feature or request
#65 opened Aug 31, 2021 by huddlej
Divergence tree does not display properly on the x-axis for nextflu site bug Something isn't working
#61 opened Apr 20, 2021 by huddlej
@joverlee521
6
Some strain names in titer records are misspelled bug Something isn't working
#60 opened Apr 12, 2021 by huddlej
Strains with ambiguous dates are assigned two different dates in auspice output bug Something isn't working
#48 opened Jan 10, 2020 by huddlej
@huddlej
subsampling in flu
#38 opened Aug 31, 2019 by rneher
Epitope and non-epitope coloring for H1N1pdm NA broken
#33 opened Jul 2, 2019 by trvrb
@barneypotter24
1
ProTip! Follow long discussions with comments:>50.