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@nextstrain-bot nextstrain-bot released this 14 May 22:32
3.5.0
3475c1b

Nextclade 3.5.0

Algorithm

Detect loss of amino acid motifs correctly

Nextclade sometimes failed to detect a motif loss if that motif was the only one in its category. This is now fixed and users could observe changes in detected lost motifs. This affects datasets using aaMotifs property in their pathogen.json file, notably the flu datasets.

Nextclade Web

Ensure currently selected dataset is reloaded when it changes remotely

When dataset-url URL parameter is provided Nextclade Web would not update the dataset's pathogen.json file when remote dataset changes without changing its version. This is now fixed. It only affected users providing custom datasets using dataset-url URL parameter.

General

Upgrade Auspice

The Auspice tree rendering package has been updated from version 2.52.1 to version 2.53.0. See the list of changes here

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

  • 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
  • 🐋 Docker images are available on DockerHub
  • 🐍 Conda package is available in bioconda channel.
Assets 9