filter germline consented samples in germline mode#870

Draft

anoronh4 wants to merge 5 commits intodevelopfrom feature/germline_processconsented

+74-4

Commits on Jan 26, 2021

add support for file input in params.germline parameter to selectively process germline samples in germline mode in a given list.
anoronh4
committed

Commits on Jan 27, 2021

add support for germline selection in cohort aggregation
anoronh4
committed

Commits on Jan 29, 2021

clean up unused channels and extra code
anoronh4
committed

Commits on Feb 3, 2021

Merge branch 'develop' into feature/germline_processconsented
anoronh4
authored

Commits on Aug 10, 2021

Merge branch 'develop' into feature/germline_processconsented
anoronh4
authored