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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 361 212

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 134 65

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 59 30

Repositories

Showing 10 of 216 repositories
  • ecDNA-Echo Public

    Pipeline to Analyze ecDNA in collaboration with BoundlessBio

    mskcc/ecDNA-Echo’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 21, 2024
  • ridgeback Public

    Toil API

    mskcc/ridgeback’s past year of commit activity
    Python 1 2 38 3 Updated Jun 21, 2024
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 20 Updated Jun 21, 2024
  • NeoAntigen-Pipeline Public

    Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

    mskcc/NeoAntigen-Pipeline’s past year of commit activity
    1 MIT 0 15 1 Updated Jun 21, 2024
  • process_fastq Public

    This package will help process, merge and link fastq in user specified directory from manifest file

    mskcc/process_fastq’s past year of commit activity
    Python 0 0 0 16 Updated Jun 21, 2024
  • tempo Public

    CCS research pipeline to process WES and WGS TN pairs

    mskcc/tempo’s past year of commit activity
    Groovy 12 5 50 (1 issue needs help) 6 Updated Jun 20, 2024
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 0 8 Updated Jun 20, 2024
  • LimsRest Public

    the restful service used by the IGO LIMS

    mskcc/LimsRest’s past year of commit activity
    Java 2 2 5 4 Updated Jun 20, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Jun 20, 2024
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 1 1 (1 issue needs help) 30 Updated Jun 20, 2024
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