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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 379 219

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 147 68

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 229 repositories
  • argos-cwl Public

    A portable and reproducible pipeline for targeted analysis

    mskcc/argos-cwl’s past year of commit activity
    Common Workflow Language 0 0 5 3 Updated Jan 18, 2025
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 1 1 (1 issue needs help) 31 Updated Jan 17, 2025
  • smile-label-generator Public

    SMILE messaging service for handling CMO label generation

    mskcc/smile-label-generator’s past year of commit activity
    Java 0 AGPL-3.0 3 0 0 Updated Jan 17, 2025
  • forte Public

    Functional Observation of RNA Transcriptome Elements/Expression

    mskcc/forte’s past year of commit activity
    Nextflow 7 MIT 0 22 3 Updated Jan 17, 2025
  • smile-databricks-gateway Public
    mskcc/smile-databricks-gateway’s past year of commit activity
    Go 0 AGPL-3.0 0 0 0 Updated Jan 17, 2025
  • neoantigen-pipeline Public

    Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

    mskcc/neoantigen-pipeline’s past year of commit activity
    Python 1 MIT 0 10 2 Updated Jan 16, 2025
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 1 7 Updated Jan 16, 2025
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 20 Updated Jan 16, 2025
  • mskprotobuf Public

    Repository for storing protocol buffer definitions and generated code

    mskcc/mskprotobuf’s past year of commit activity
    Shell 1 1 0 1 Updated Jan 16, 2025
  • igo-sample-qc-node Public

    Sample QC with nodejs backend

    mskcc/igo-sample-qc-node’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 16, 2025
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