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72 Open 998 Closed
72 Open 998 Closed
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Issues list

Run assessment on how many CMO labels in SMILE are affected by the bad numbering (tumor count assignment)
#1373 opened Jan 9, 2025 by ao508
Adjust neo4j transactions to also rollback patient nodes created when a sample fails to import
#1372 opened Jan 9, 2025 by ao508
DB cleanup
#1371 opened Jan 9, 2025 by ao508
1 of 2 tasks
1
Angelica - draft roadmap of SMILE 2025 goals
#1370 opened Jan 8, 2025 by ao508
[dashboard] Surface the alt id field Dashboard Development DEPLOYED
#1369 opened Jan 8, 2025 by qu8n
1
Can we repurpose the comments field in sample metadata for logging changes made to data/labels.
#1368 opened Jan 8, 2025 by ao508
[smile-server] Add message handler for getting samples by alt ID DEPLOYED MetaDB Server Development
#1359 opened Dec 20, 2024 by ao508
Backfill alt id for all SMILE research samples external-dependencies MetaDB Server Development READY TO DEPLOY
#1358 opened Dec 19, 2024 by ao508
3 tasks done
1
[smile-server] monitor changes/updates to embargo status for tempo-cbio pipeline TEMPO-cBio Pipeline
#1354 opened Dec 18, 2024 by ao508
1
[smile-server] Publish (release) samples events for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1353 opened Dec 18, 2024 by ao508
1
Support protobuff for TEMPO-cBio pipeline JSON/data model TEMPO-cBio Pipeline
#1352 opened Dec 18, 2024 by ao508
1
Pub/Sub permissions for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1351 opened Dec 18, 2024 by ao508
1
Add ALT ID into sample schema (metadata node -> additionalProperties) DEPLOYED MetaDB Server Development
#1346 opened Dec 11, 2024 by ao508
1
TEMPO-cBio pipeline Epic TEMPO-cBio Pipeline
#1344 opened Dec 4, 2024 by ao508
Look into SMILE CRDB crosswalk table mappings discussion Bring issue up for discussion. external-dependencies
#1325 opened Nov 15, 2024 by ao508
[label generator] Base nucleic acid counter on altId (increment on a per-sample basis instead of per-patient) DEPLOYED MetaDB Server Development
#1296 opened Oct 18, 2024 by ao508
7 tasks
1
Move 12-245 Part A/C consent status to patient-level metadata MetaDB Server Development
#1271 opened Sep 4, 2024 by ao508
1
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
Add message handler in SMILE server for incoming dbGap sample updates. dbGaP MetaDB Server Development
#1208 opened Jun 26, 2024 by ao508
Make dbGap info editable on SMILE dashboard (and push update to SMILE) Dashboard Development dbGaP
#1207 opened Jun 26, 2024 by ao508
Backfill existing dbGap sample data. dbGaP
#1206 opened Jun 26, 2024 by ao508
[dashboard] Export data from dbGap view into phenotype file format Dashboard Development dbGaP
#1205 opened Jun 26, 2024 by ao508
Display dbGap study in sample view and add dbGap tab Dashboard Development dbGaP
#1198 opened Jun 20, 2024 by ao508
[smile-server] Update db schema with dbGaP node/relationship dbGaP discussion Bring issue up for discussion. MetaDB Server Development
#1197 opened Jun 20, 2024 by ao508
dbGaP Submission Tracking in SMILE dbGaP Epic
#1188 opened Jun 12, 2024 by ao508
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