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Release/1.30.0 #332

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Release/1.30.0 #332

wants to merge 86 commits into from

Commits on Jan 6, 2022

  1. Bump celery from 4.4.7 to 5.2.2 

    Bumps [celery](https://github.com/celery/celery) from 4.4.7 to 5.2.2.
- [Release notes](https://github.com/celery/celery/releases)
- [Changelog](https://github.com/celery/celery/blob/master/Changelog.rst)
- [Commits](celery/celery@v4.4.7...v5.2.2)

---
updated-dependencies:
- dependency-name: celery
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
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Commits on Jan 6, 2023

  1. Bump gitpython from 3.0.8 to 3.1.30 

    Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.0.8 to 3.1.30.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.0.8...3.1.30)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
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  2. Bump django-filter from 2.1.0 to 2.4.0 

    Bumps [django-filter](https://github.com/carltongibson/django-filter) from 2.1.0 to 2.4.0.
- [Release notes](https://github.com/carltongibson/django-filter/releases)
- [Changelog](https://github.com/carltongibson/django-filter/blob/main/CHANGES.rst)
- [Commits](carltongibson/django-filter@2.1.0...2.4.0)

---
updated-dependencies:
- dependency-name: django-filter
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
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  3. Bump django from 2.2.24 to 2.2.28 

    Bumps [django](https://github.com/django/django) from 2.2.24 to 2.2.28.
- [Release notes](https://github.com/django/django/releases)
- [Commits](django/django@2.2.24...2.2.28)

---
updated-dependencies:
- dependency-name: django
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
    @dependabot
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Commits on Feb 7, 2023

  1. adding span instrumentation

    @D-Pankey
    D-Pankey authored Feb 7, 2023
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Commits on May 25, 2023

  1. Create Jenkinsfile

    @D-Pankey
    D-Pankey authored May 25, 2023
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  2. Update Jenkinsfile

    @D-Pankey
    D-Pankey authored May 25, 2023
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  3. Update Jenkinsfile

    @D-Pankey
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  4. Update Jenkinsfile

    @D-Pankey
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  5. Update Jenkinsfile

    @D-Pankey
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  6. Update Jenkinsfile

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Commits on May 26, 2023

  1. Update Jenkinsfile

    @D-Pankey
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Commits on Jun 1, 2023

  1. Merge pull request #312 from mskcc/feature/dd_trace 

    adding span instrumentation
    @D-Pankey
    D-Pankey authored Jun 1, 2023
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  2. Disable ddtrace for tests, and black formatting

    Ivkovic authored and Ivkovic committed Jun 1, 2023
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Commits on Jun 7, 2023

  1. Merge branch 'develop' of github.com:mskcc/ridgeback into develop_mock

    @nikhil
    nikhil committed Jun 7, 2023
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  2. Fixed jenkins file ssh and formatting

    @nikhil
    nikhil committed Jun 7, 2023
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  3. Added integration_tests for ridgeback

    @nikhil
    nikhil committed Jun 7, 2023
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  4. Load singularity after ssh

    @nikhil
    nikhil committed Jun 7, 2023
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Commits on Jun 12, 2023

  1. Merge branch 'develop' of github.com:mskcc/ridgeback into develop_mock

    @nikhil
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Commits on Jul 1, 2023

  1. Update Jenkinsfile to use develop branch

    @nikhil
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Commits on Jul 7, 2023

  1. Merge pull request #321 from mskcc/develop_mock 

    Add CI and CD
    @nikhil
    nikhil authored Jul 7, 2023
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Commits on Jul 24, 2023

  1. Merge pull request #322 from mskcc/feature/dd_trace_develop 

    Feature/dd trace develop
    @D-Pankey
    D-Pankey authored Jul 24, 2023
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Commits on Jul 26, 2023

  1. Merge pull request #323 from mskcc/master 

    Backport master to develop
    @nikhil
    nikhil authored Jul 26, 2023
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Commits on Aug 22, 2023

  1. Preserve work dir

    @nikhil
    nikhil authored Aug 22, 2023
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Commits on Oct 12, 2023

  1. Fixed typo

    @nikhil
    nikhil committed Oct 12, 2023
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  2. Do not run command tool status on completed leader jobs

    @nikhil
    nikhil committed Oct 12, 2023
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Commits on Oct 13, 2023

  1. Merge pull request #327 from mskcc/master 

    Master to Develop
    @sivkovic
    sivkovic authored Oct 13, 2023
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Commits on Oct 16, 2023

  1. Merge pull request #324 from mskcc/feature/preserve_work_dir 

    Preserve work dir
    @nikhil
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Commits on Oct 18, 2023

  1. Update toil_jobsubmitter.py 

    - this is the only repository that needs to be run like this
    buehlere committed Oct 18, 2023
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  2. Merge pull request #328 from mskcc/hotfix/access_submit 

    Update toil_jobsubmitter.py
    @buehlere
    buehlere authored Oct 18, 2023
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Commits on Nov 7, 2023

  1. Merge branch 'develop' of github.com:mskcc/ridgeback into develop

    @nikhil
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Commits on Nov 9, 2023

  1. Merge pull request #326 from mskcc/hotfix/fix_permission_set 

    Hotfix/fix permission set
    @nikhil
    nikhil authored Nov 9, 2023
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  2. Version bump

    @nikhil
    nikhil authored Nov 9, 2023
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  3. Added setting for setting max hours for hanging job detection

    @nikhil
    nikhil committed Nov 9, 2023
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  4. Added task to check for hanging jobs

    @nikhil
    nikhil committed Nov 9, 2023
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  5. Added check hanging function

    @nikhil
    nikhil committed Nov 9, 2023
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  6. Added alerts field to message

    @nikhil
    nikhil committed Nov 9, 2023
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  7. Added log path to command line tool details

    @nikhil
    nikhil committed Nov 9, 2023
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  8. Added tests

    @nikhil
    nikhil committed Nov 9, 2023
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  9. Added black formatting

    @nikhil
    nikhil committed Nov 9, 2023
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Commits on Nov 14, 2023

  1. Added tool and leader walltime fields for jobsubmitter

    @nikhil
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  2. Added tool and leader walltime fields for job

    @nikhil
    nikhil committed Nov 14, 2023
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  3. Removed unused setting to prevent confusion

    @nikhil
    nikhil committed Nov 14, 2023
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  4. Added walltime field migration

    @nikhil
    nikhil committed Nov 14, 2023
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  5. Added black formatting

    @nikhil
    nikhil committed Nov 14, 2023
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  6. Fixed walltime query

    @nikhil
    nikhil committed Nov 14, 2023
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  7. Fixed tests

    @nikhil
    nikhil committed Nov 14, 2023
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  8. Added new tests for tool walltime

    @nikhil
    nikhil committed Nov 14, 2023
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  9. Added black formatting

    @nikhil
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  10. Added flake8 fix

    @nikhil
    nikhil committed Nov 14, 2023
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  11. Added deprecated warning for old ridgeback job

    @nikhil
    nikhil committed Nov 14, 2023
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  12. Updated container env varaibles

    @nikhil
    nikhil committed Nov 14, 2023
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  13. Fix expected limit calculation

    @nikhil
    nikhil committed Nov 14, 2023
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  14. Fixed tests

    @nikhil
    nikhil committed Nov 14, 2023
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Commits on Nov 16, 2023

  1. Fix orchestrator tests

    @nikhil
    nikhil committed Nov 16, 2023
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  2. Added black formatting

    @nikhil
    nikhil committed Nov 16, 2023
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  3. Fix default walltime

    @nikhil
    nikhil authored Nov 16, 2023
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  4. Added migrations to rename walltime field

    @nikhil
    nikhil committed Nov 16, 2023
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  5. Added default walltime value migration

    @nikhil
    nikhil committed Nov 16, 2023
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  6. Revert leader_walltime to walltime

    @nikhil
    nikhil committed Nov 16, 2023
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  7. Added simpler migration

    @nikhil
    nikhil committed Nov 16, 2023
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  8. Added black formatting

    @nikhil
    nikhil committed Nov 16, 2023
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  9. Prevent submission lockup

    @nikhil
    nikhil committed Nov 16, 2023
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  10. Fix checking hanging jobs

    Ivkovic authored and Ivkovic committed Nov 16, 2023
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Commits on Nov 17, 2023

  1. Fix check hanging job

    Ivkovic authored and Ivkovic committed Nov 17, 2023
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  2. Updated container file

    @nikhil
    nikhil committed Nov 17, 2023
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Commits on Nov 20, 2023

  1. Fixed commandline filtering parameters

    @nikhil
    nikhil committed Nov 20, 2023
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  2. Added black formatting

    @nikhil
    nikhil committed Nov 20, 2023
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  3. Merge branch 'feature/added_hanging_job_detection' of github.com:mskc… 

    …c/ridgeback into feature/added_hanging_job_detection
    @nikhil
    nikhil committed Nov 20, 2023
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Commits on Nov 22, 2023

  1. Removed unnecessary env

    @nikhil
    nikhil authored Nov 22, 2023
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  2. Removed another unused env

    @nikhil
    nikhil authored Nov 22, 2023
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Commits on Nov 24, 2023

  1. Merge pull request #329 from mskcc/feature/version_bump 

    Version bump
    @nikhil
    nikhil authored Nov 24, 2023
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  2. Add black migration

    @nikhil
    nikhil committed Nov 24, 2023
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  3. Merge branch 'feature/add_tool_level_walltime' of github.com:mskcc/ri… 

    …dgeback into feature/add_tool_level_walltime
    @nikhil
    nikhil committed Nov 24, 2023
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  4. Fixed process test

    @nikhil
    nikhil committed Nov 24, 2023
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  5. Add flake and black fixes

    @nikhil
    nikhil committed Nov 24, 2023
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Commits on Nov 25, 2023

  1. Fix non-deterministic test

    @nikhil
    nikhil committed Nov 25, 2023
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Commits on Jan 10, 2024

  1. Merge pull request #330 from mskcc/feature/added_hanging_job_detection 

    Add hanging job detection
    @sivkovic
    sivkovic authored Jan 10, 2024
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  2. Merge pull request #331 from mskcc/feature/add_tool_level_walltime 

    Feature/add tool level walltime
    @allanbolipata
    allanbolipata authored Jan 10, 2024
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  3. Merge pull request #290 from mskcc/dependabot/pip/gitpython-3.1.30 

    Bump gitpython from 3.0.8 to 3.1.30
    @allanbolipata
    allanbolipata authored Jan 10, 2024
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  4. Merge pull request #260 from mskcc/dependabot/pip/django-filter-2.4.0 

    Bump django-filter from 2.1.0 to 2.4.0
    @allanbolipata
    allanbolipata authored Jan 10, 2024
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  5. Merge pull request #255 from mskcc/dependabot/pip/django-2.2.28 

    Bump django from 2.2.24 to 2.2.28
    @allanbolipata
    allanbolipata authored Jan 10, 2024
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  6. Merge branch 'develop' into dependabot/pip/celery-5.2.2

    @allanbolipata
    allanbolipata authored Jan 10, 2024
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  7. Merge pull request #253 from mskcc/dependabot/pip/celery-5.2.2 

    Bump celery from 4.4.7 to 5.2.2
    @allanbolipata
    allanbolipata authored Jan 10, 2024
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Commits on Feb 7, 2024

  1. Create github-actions.yml

    @D-Pankey
    D-Pankey committed Feb 7, 2024
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  2. Merge pull request #336 from mskcc/feature/githubactions_release1.30.0 

    Create github-actions.yml
    @D-Pankey
    D-Pankey authored Feb 7, 2024
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