Create github-actions.yml

.github/workflows/github-actions.yml

@@ -0,0 +1,68 @@
+on:
+ push:
+ branches: [ "release/1.30.0" ]
+
+jobs:
+ build:
+
+ runs-on: ubuntu-latest
+
+ services:
+ postgres:
+ image: postgres:latest
+ env:
+ POSTGRES_USER: postgres
+ POSTGRES_PASSWORD: postgres
+ POSTGRES_DB: github_actions
+ ports:
+ - 5432:5432
+ # needed because the postgres container does not provide a healthcheck
+ options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+
+
+ steps:
+ - uses: actions/checkout@v2
+ - name: Set up Python 3.9
+ uses: actions/setup-python@v4
+ with:
+ python-version: 3.9
+ - name: Install dependencies
+ run: |
+ pip install pip==19.3.1
+ pip install --force-reinstall 'setuptools<58.0.0'
+ pip install -r requirements.txt
+ pip install -r requirements-toil.txt
+ #python manage.py migrate
+ - name: Run migrations
+ run: python manage.py migrate
+ - name: Run test
+ #run: python manage.py test
+ run: |
+ coverage run --source='.' manage.py test
+ coverage report -m --fail-under=75
+ - name: Run flake8
+ uses: suo/flake8-github-action@releases/v1
+ with:
+ checkName: 'build' # NOTE: this needs to be the same as the job name
+ env:
+ RIDGEBACK_DB_NAME: github_actions
+ RIDGEBACK_DB_PASSWORD: postgres
+ RIDGEBACK_DB_USERNAME: postgres
+ RIDGEBACK_TOIL_JOB_STORE_ROOT: /sample_path
+ RIDGEBACK_TOIL_WORK_DIR_ROOT: /sample_path
+ RIDGEBACK_TOIL_TMP_DIR_ROOT: /sample_path
+ RIDGEBACK_LSF_WALLTIME: 10:00
+ RIDGEBACK_LSF_SLA: SLA
+ CELERY_LOG_PATH: /sample_path
+ CELERY_PID_PATH: /sample_path
+ CELERY_BEAT_SCHEDULE_PATH: /sample_path
+ RIDGEBACK_NEXTFLOW_JOB_STORE_ROOT: /sample_path
+ RIDGEBACK_NEXTFLOW_WORK_DIR_ROOT: /sample_path
+ RIDGEBACK_NEXTFLOW_TMP_DIR_ROOT: /sample_path
+ SINGULARITY_PATH: /sample_singularity
+ RIDGEBACK_VENV: /sample_path
+ RIDGEBACK_PATH: /sample_path
+ RIDGEBACK_PORT: 4009
+ RIDGEBACK_DEFAULT_QUEUE: sample_queue
+ RIDGEBACK_RABBITMQ_USERNAME: sample_username
+ RIDGEBACK_RABBITMQ_PASSWORD: sample_password