TCGAnalyzeR which is an R Shiny based web application enables an integrated analysis of genomic, transcriptomic and clinical data 33 cancer types in TCGA projects; 123 pre-computed pan-cancer cohorts (MSI-H, Immune, PAM50, Triple Negative, IDH1 etc).
Citing the TCGAnalyzeR:
Zengin T, Abak-Masud B, Önal-Süzek T, TCGAnalyzeR: a web application for integrative visualization of molecular and clinical data of cancer patients for cohort and associated gene discovery. bioRxiv 2023.01.20.524925