fix

Author: katarzyna.otylia.sikora@gmail.com

snakePipes/workflows/ChIPseq/internals.snakefile

@@ -236,7 +236,7 @@ if sampleSheet:
             genrichDict[k]=[item for item in genrichDict[k] if item in chip_samples]
         reordered_dict = {k: filtered_dict[k] for k in [item for sublist in genrichDict.values() for item in sublist]}
     else:
-        #print(genrichDict)
+        print(genrichDict)
         reordered_dict = {}
         for g in genrichDict.keys():
             for k in genrichDict[g].keys():

snakePipes/workflows/DNAmapping/Snakefile

@@ -87,7 +87,7 @@ else:
 if "allelic-whatshap" in mode:
     include: os.path.join(maindir, "shared", "rules", "whatshap.snakefile")
     include: os.path.join(maindir, "shared", "rules", "deepTools_qc_allelic.snakefile")
-    if useSpikeinForNorm:
+    if useSpikeInForNorm:
         include: os.path.join(maindir, "shared", "rules", "deepTools_qc_allelic_spikein.snakefile")
 
 ### conditional/optional rules #################################################