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conda build is failing with python 3.12

conda

External ToolAn update/modification of an external tool is neededAn update/modification of an external tool is needed

Status: Open.

#1159 In maxplanck-ie/snakepipes;

· katsikora opened on Dec 19, 2025

consider renaming bw files after the applied normalization method

Status: Open.

#1157 In maxplanck-ie/snakepipes;

· katsikora opened on Dec 1, 2025

update documentation on normalization for bamCoverage files

Status: Open.

#1155 In maxplanck-ie/snakepipes;

· katsikora opened on Dec 1, 2025

rule run_eisaR failing for GRCh38_gencode40

createIndices

Status: Open.

#1153 In maxplanck-ie/snakepipes;

· katsikora opened on Nov 20, 2025

add support for alignment-free + allelic-whatshap + fromBAM in mRNA seq

Status: Open.

#1152 In maxplanck-ie/snakepipes;

· katsikora opened on Nov 20, 2025

add whatshap-allelic mode to dna-mapping

DNA-mapping

enhancement

Status: Open.

#1151 In maxplanck-ie/snakepipes;

· katsikora opened on Nov 18, 2025

ATACseq fixes and extentions

Status: Open.

#1150 In maxplanck-ie/snakepipes;

· katsikora opened on Nov 17, 2025

deprecate allelic counting mode in mRNAseq

Status: Open.

#1146 In maxplanck-ie/snakepipes;

· katsikora opened on Nov 13, 2025

WGBS calculate conversion rate over lambda chromosome

enhancement

WGBS

Status: Open.

#1130 In maxplanck-ie/snakepipes;

· katsikora opened on Sep 26, 2025

histoneHMM error

bug

ChIP-Seq

External ToolAn update/modification of an external tool is neededAn update/modification of an external tool is needed

Status: Open.

#1127 In maxplanck-ie/snakepipes;

· katsikora opened on Sep 26, 2025

Mem / resource allocation - retries

Status: Open.

#1108 In maxplanck-ie/snakepipes;

· WardDeb opened on Jul 28, 2025

add size-factor-normalized bw to DNAmapping and ChIPseq workflows

ChIP-Seq

DNA-mapping

enhancement

Status: Open.

Feature

#1105 In maxplanck-ie/snakepipes;

· katsikora opened on Jun 24, 2025