Skip to content

v1.11

Latest
Latest
Compare
Choose a tag to compare
@daler daler released this 23 Sep 12:57
· 3 commits to master since this release
v1.11
b151a17
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
  • Add samtools stats and samtools flagstat for additional QC options (#397)
  • Overhauls the way output Rds objects are made from RNA-seq downstream RMarkdown files (#399, thanks @mitraak)
    • This prepares for integration with Carnation, an interactive web interface currently still in development but being used internally
    • Rds files are dramatically smaller after stripping out superfluous data
    • Better support for running rnaseq.Rmd followed by functional-enrichment.Rmd, and/or gene-patterns.Rmd without overwriting existing Rds files.
  • Support universe of expressed genes by default when running functional enrichment, while also supporting customization if needed (#401, thanks @Mira0507 )
  • Support LRT in the lcdb::make_results machinery (#396, thanks @menoldmt)

Contributors

mitraak, Mira0507, and menoldmt
Assets 2
Loading