v1.11

• Add samtools stats and samtools flagstat for additional QC options (#397)
• Overhauls the way output Rds objects are made from RNA-seq downstream RMarkdown files (#399, thanks @mitraak)
  • This prepares for integration with Carnation, an interactive web interface currently still in development but being used internally
  • Rds files are dramatically smaller after stripping out superfluous data
  • Better support for running rnaseq.Rmd followed by functional-enrichment.Rmd, and/or gene-patterns.Rmd without overwriting existing Rds files.
• Support universe of expressed genes by default when running functional enrichment, while also supporting customization if needed (#401, thanks @Mira0507 )
• Support LRT in the lcdb::make_results machinery (#396, thanks @menoldmt)

v1.10.2

Merge pull request #376 from lcdb/v1.10.2rc

V1.10.2rc

v1.10.1

updt changelog

v1.10

v1.10

v1.7

See https://lcdb.github.io/lcdb-wf/changelog.html for changelog.

v1.5.3

See https://lcdb.github.io/lcdb-wf/changelog.html for changelog.