Releases: jamesdalg/CNVScope
CNVScope v3.6.0: rtracklayer fix, closeAllConnections() removed
v.3.5.6 CRAN release, OSX binary
This is the currently accepted CRAN release as of January 14, 2020. Major changes include making plotly a suggested package and the end of the orphaned status of the plotly package, which enabled this version to be made public. I've tested this and it does indeed run on OSX without the errors shown on the OSX CRAN check servers (which aren't installing Bioconductor dependencies). In any case, if you have issues, feel free to reach out and I'll address the issues any user might have.
--James Dalgleish
v3.4.2 CRAN compatible release, January 2021
This release addresses issues with OSX users installing the CNVScope package without suggested dependencies. I have made these dependencies optional. Please post any issues you may have, with sessionInfo() so that I might help you.
fixes to suggested dependencies using conditional execution
This release addresses multiple issues for OSX systems. Please comment if you have issues with your OSX system on the issues page and fix the issues as much as can be done reasonably (or provide a decent workaround as a temporary measure).
Please note, that although the package has 0 errors/notes/warnings, this is still a work in progress.
Gene search fixed & genes with a single click in plot view; CRAN fixes.
I've updated both plotly.nci.nih.gov and cnvscope.nci.nih.gov and both work identically. Gene search has been fixed and genes on the left of the plot window has been added to the package version. remotes::install_github("jamesdalg/CNVScope") should pull down the new version, which works with v0.0.3 of CNVScopePublicData.
3.1.8: Merge pull request #49 from jamesdalg/dev
CNVScope v3.1.8 (Release Date 2020-7-2)
*Reduced imports to 20 and moved the remainder of packages into suggests.
*Fixed whole genome map.
*Optimized load time to plot a whole genome map (should be roughly a 50% reduction, according to profvis).
3.0.6-HiCseg->jointSeg for OSX fix.
Some users have been reporting issues with HiCseg, so this version disables the functionality. Users are free to use OSX with HiCseg (it checks perfectly), but be sure to have the proper dependencies installed correctly. For issues related to HiCseg, please replicate the issue using the HiCseg package.
CRAN Fixes
Merge pull request #40 from jamesdalg/dev added another check for ComplexHeatmap
CRAN fixes to Biostrings dependency
Minor change-- most of these recent changes are just changes to fix CRAN notes and make the package ready for R-4.0. This should make the repo match what's currently on CRAN.
2.9.2-- Minor CRAN fixes, per CRAN staff
This addresses a minor issue that creates an error in rebinGenomicInteractions (a check at the end will break the function because R 4.0 has changed all matrices to have a vector length of 2 when checking the class of a matrix). This should have little to no effect on the user, but should keep the package running smoothly and keep it on CRAN>