Merge pull request #26 from jamesdalg/dev

v2.9.4, CRAN fix
jamesdalg · Dec 10, 2019 · 56158d6 · 56158d6
2 parents caad27f + 1be4939
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,13 +1,13 @@
 Package: CNVScope
 Type: Package
 Title: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization
-Version: 2.9.2
-Date: 2019-12-5
+Version: 2.9.4
+Date: 2019-12-7
 Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
 Maintainer: James Dalgleish <[email protected]>
 BugReports: https://github.com/jamesdalg/CNVScope/issues/
 Depends: R (>= 3.5.0),ggplot2
-Imports: InteractionSet,BiocManager,tidyr,S4Vectors,circlize,igraph,visNetwork,reshape2,magrittr,htmltools,htmlwidgets,jointseg,plotly,shinyjs,logging,shiny,RCurl,foreach,GenomicFeatures,GenomicInteractions,HiCseg,IRanges,Matrix,OpenImageR,biomaRt,heatmaply,matrixStats,shinythemes,shinycssloaders,spatialfil,GenomicRanges,plyr,data.table,rslurm,dplyr,numbers,rtracklayer,BSgenome.Hsapiens.UCSC.hg19,doParallel,stringr,tibble,GenomeInfoDb,Biostrings
+Imports: InteractionSet,BiocManager,tidyr,S4Vectors,circlize,igraph,visNetwork,reshape2,magrittr,htmltools,htmlwidgets,jointseg,plotly,shinyjs,logging,shiny,RCurl,foreach,GenomicFeatures,GenomicInteractions,HiCseg,IRanges,Matrix,OpenImageR,biomaRt,heatmaply,matrixStats,shinythemes,shinycssloaders,spatialfil,GenomicRanges,plyr,data.table,rslurm,dplyr,numbers,rtracklayer,BSgenome.Hsapiens.UCSC.hg19,doParallel,stringr,tibble,GenomeInfoDb
 Suggests: knitr, rmarkdown,remotes,pwr,ComplexHeatmap
 VignetteBuilder: knitr
 URL: https://github.com/jamesdalg/CNVScope/

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+CNVScope v2.9.4 (Release Date 2019-12-7)
+==============
+*Removed Biostrings dependency to clear NOTE 
+(although packages that CNVScope depends on require it). The prior Biostrings issue has been
+fixed.
+
 CNVScope v2.9.2 (Release Date 2019-12-5)
 ==============
 *Added an explicit dependency, Biostrings to keep CRAN check errors on debian from occurring.