Running InVesalius 3 in Windows

Windows 64 bits (tested on Windows 7)

1. Python 2.7.8 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python-2.7.8.amd64.msi

• Create a system variable named %PYTHONPATH% with values: C:\Python27;C:\Python27\Lib;C:\Python27\Lib\site-packages;C:\Python27\Scripts;
• Insert into Path varibale the value %PYTHONPATH%

2. wxPython 3.0.2 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/wxPython3.0-win64-3.0.2.0-py27.exe

3. PIP - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/get-pip.py

• Download the script and execute python get-pip.py

4. Numpy 1.11.0 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl

• Download and execute pip install numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl

5. Scipy 0.17.1 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scipy-0.17.1-cp27-cp27m-win_amd64.whl

• Download and execute pip install scipy-0.17.1-cp27-cp27m-win_amd64.whl

6. Pillow (new Python Image Library) - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/Pillow-3.2.0-cp27-cp27m-win_amd64.whl

• Download and execute pip install Pillow-3.2.0-cp27-cp27m-win_amd64.whl

7. Matplotlib 1.5.1 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/matplotlib-1.5.1-cp27-none-win_amd64.whl

• Download and execute pip install matplotlib-1.5.1-cp27-none-win_amd64.whl

8. Scikit Image 0.12.3 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scikit_image-0.12.3-cp27-cp27m-win_amd64.whl

• Download and execute pip install scikit_image-0.12.3-cp27-cp27m-win_amd64.whl

9. Nibabel 2.0.2 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/nibabel-2.0.2-py2.py3-none-any.whl

• Download and execute pip install nibabel-2.0.2-py2.py3-none-any.whl

10. PySerial 3.0.1 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/pyserial-3.0.1-py2.py3-none-any.whl

• Download and execute pip install pyserial-3.0.1-py2.py3-none-any.whl

11. PSUtil 4.2.0 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/psutil-4.2.0-cp27-cp27m-win_amd64.whl

• Download and execute pip install psutil-4.2.0-cp27-cp27m-win_amd64.whl

12. VTK 6.3.0 - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vtk.zip

• Download and unzip on C:\Python27\Lib\site-packages and add on %PYTHONPATH% variable the value C:\Python27\Lib\site-packages\vtk\vtk;

13. GDCM (trunk) - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/gdcm.zip

• Download and unzip on C:\Python27\Lib\site-packages and add on %PYTHONPATH% variable the value C:\Python27\Lib\site-packages\gdcm;

14. CA Smoothing - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python_ca_smoothing.zip

• Download and unzip the two files on C:\Python27\Lib\site-packages

15. Visual C++ 2015 Runtime - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vcredist_x64.exe

• Download and install

16. Cython

• Execute pip install cython

17. Futures

• Execute pip install futures

18. Compiled InVesalius parts

• Option 1: Install Microsoft Visual Studio Community 2015 and execute python setup.py build_ext --inplace on invesalius3 folder.

• Option 2: Download pre-compiled parts and unzip on invesalius3/invesalius/data - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/invesalius-compiled_parts.zip

Special thank's to Christoph Gohlke, Laboratory for Fluorescence Dynamics, University of California, Irvine for providing the pre-compiled of various python packages for Windows 64 bits