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ImageJ

Open source scientific multidimensional image processing
README.md

ImageJ is open source software for processing and analyzing scientific images.

ImageJ is the original desktop application which has been in development since 1997.

ImageJ2 is a new version of ImageJ targeting scientific multidimensional image data.

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  1. ImageJ ImageJ Public

    Public domain software for processing and analyzing scientific images

    Java 672 242

  2. imagej2 imagej2 Public

    Open scientific N-dimensional image processing 🔬 🎇

    Java 1.3k 342

  3. example-legacy-plugin example-legacy-plugin Public template

    Simple Maven project for an ImageJ 1.x plugin

    Java 34 41

  4. example-imagej2-command example-imagej2-command Public template

    Simple Maven project for an ImageJ2 command

    Java 31 19

  5. imagej.github.io imagej.github.io Public

    The ImageJ wiki

    JavaScript 28 143

  6. tutorials tutorials Public

    ImageJ2 programming examples

    Jupyter Notebook 189 116

Repositories

Showing 10 of 84 repositories
  • pyimagej Public

    Use ImageJ from Python

    imagej/pyimagej’s past year of commit activity
    Python 512 92 52 4 Updated Sep 2, 2025
  • ImageJ Public

    Public domain software for processing and analyzing scientific images

    imagej/ImageJ’s past year of commit activity
    Java 672 242 71 8 Updated Sep 2, 2025
  • imagej.github.io Public

    The ImageJ wiki

    imagej/imagej.github.io’s past year of commit activity
    JavaScript 28 143 62 (1 issue needs help) 4 Updated Sep 2, 2025
  • list-of-update-sites Public

    The update sites ImageJ2 knows about automatically

    imagej/list-of-update-sites’s past year of commit activity
    Python 6 100 1 0 Updated Aug 28, 2025
  • imagej-legacy Public

    ImageJ+ImageJ2 compatibility layer

    imagej/imagej-legacy’s past year of commit activity
    Java 17 BSD-2-Clause 27 97 (1 issue needs help) 13 Updated Aug 27, 2025
  • napari-imagej Public

    Use ImageJ functionality from napari

    imagej/napari-imagej’s past year of commit activity
    Python 31 BSD-2-Clause 5 42 1 Updated Aug 27, 2025
  • imagej2 Public

    Open scientific N-dimensional image processing 🔬 🎇

    imagej/imagej2’s past year of commit activity
    Java 1,283 BSD-2-Clause 342 136 1 Updated Aug 12, 2025
  • imagej-ui-swing Public

    ImageJ UI for Java Swing.

    imagej/imagej-ui-swing’s past year of commit activity
    Java 11 BSD-2-Clause 21 32 4 Updated Aug 4, 2025
  • .github Public

    ImageJ organization profile

    imagej/.github’s past year of commit activity
    1 Unlicense 1 0 0 Updated Jul 29, 2025
  • ij1-patcher Public

    Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layer

    imagej/ij1-patcher’s past year of commit activity
    Java 5 BSD-2-Clause 6 8 0 Updated Jul 17, 2025
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