Repositories list

• imagej.github.io

  Public
  The ImageJ wiki

  JavaScript

  •

  Other

  •139•27•62•3•Updated Aug 6, 2025Aug 6, 2025

• list-of-update-sites

  Public
  The update sites ImageJ2 knows about automatically

  Python

  •99•6•1•0•Updated Aug 5, 2025Aug 5, 2025

• napari-imagej

  Public
  Use ImageJ functionality from napari

  javaimagejfiji+ 2naparipython

  Python

  •

  BSD 2-Clause "Simplified" License

  •5•31•40•0•Updated Aug 5, 2025Aug 5, 2025

• pyimagej

  Public
  Use ImageJ from Python

  Python

  •

  Other

  •90•510•52•4•Updated Aug 5, 2025Aug 5, 2025

• imagej-ui-swing

  Public
  ImageJ UI for Java Swing.

  Java

  •

  BSD 2-Clause "Simplified" License

  •21•11•32•4•Updated Aug 4, 2025Aug 4, 2025

• .github

  Public
  ImageJ organization profile

  The Unlicense

  •1•1•0•0•Updated Jul 29, 2025Jul 29, 2025

• imagej2

  Public
  Open scientific N-dimensional image processing 🔬 🎇

  computer-visionimage-processing

  Java

  •

  BSD 2-Clause "Simplified" License

  •341•1.3k•136•1•Updated Jul 21, 2025Jul 21, 2025

• imagej-legacy

  Public
  ImageJ+ImageJ2 compatibility layer

  Java

  •

  BSD 2-Clause "Simplified" License

  •26•17•97•15•Updated Jul 17, 2025Jul 17, 2025

• ij1-patcher

  Public
  Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layer

  Java

  •

  BSD 2-Clause "Simplified" License

  •6•5•8•0•Updated Jul 17, 2025Jul 17, 2025

• imagej-updater

  Public
  The automatic updater for ImageJ

  Java

  •

  Other

  •15•12•56•4•Updated Jun 26, 2025Jun 26, 2025

• ImageJ

  Public
  Public domain software for processing and analyzing scientific images

  computer-visionimage-processing

  Java

  •

  Other

  •238•665•70•8•Updated Jun 12, 2025Jun 12, 2025

• imagej-tensorflow

  Public
  ImageJ/TensorFlow integration library

  Java

  •

  Other

  •14•26•8•1•Updated May 17, 2025May 17, 2025

• imagej-matlab

  Public
  MATLAB integration with ImageJ data structures and runtime.

  Java

  •

  BSD 2-Clause "Simplified" License

  •6•15•15•0•Updated Feb 4, 2025Feb 4, 2025

• dotfiles

  Public
  Configuration files for ImageJ resources

  1•2•0•0•Updated Nov 27, 2024Nov 27, 2024

• search

  Public
  ImageJ search portal

  HTML

  •2•1•2•0•Updated Nov 19, 2024Nov 19, 2024

• imagej-scripting

  Public
  ImageJ-specific applications of the SciJava script languages

  Python

  •

  Other

  •15•27•7•0•Updated Nov 7, 2024Nov 7, 2024

• imagej-plugins-commands

  Public
  Core ImageJ commands

  Java

  •

  Other

  •7•4•19•0•Updated Nov 7, 2024Nov 7, 2024

• imagej-opencv

  Public
  Convert between OpenCV and ImgLib2 data structures

  Java

  •

  BSD 2-Clause "Simplified" License

  •4•2•4•0•Updated Nov 7, 2024Nov 7, 2024

• workshops

  Public
  ImageJ Workshops

  HTML

  •3•4•0•0•Updated Oct 30, 2024Oct 30, 2024

• imagej-launcher

  Public
  The ImageJ native launcher

  Java

  •

  BSD 2-Clause "Simplified" License

  •19•22•32•2•Updated Oct 11, 2024Oct 11, 2024

• imagej-mesh

  Public
  Data structures and I/O for meshes

  Java

  •

  Other

  •4•6•7•2•Updated Aug 29, 2024Aug 29, 2024

• imagej-ops

  Public
  ImageJ Ops: "Write once, run anywhere" image processing

  Java

  •

  BSD 2-Clause "Simplified" License

  •42•89•160•15•Updated Aug 29, 2024Aug 29, 2024

• imagej-common

  Public
  ImageJ core data model

  Java

  •

  BSD 2-Clause "Simplified" License

  •16•10•61•0•Updated Aug 28, 2024Aug 28, 2024

• example-imagej2-command-kotlin

  Public template
  An ImageJ command that mixes Kotlin and Java code

  Kotlin

  •

  BSD 2-Clause "Simplified" License

  •2•5•0•0•Updated Apr 19, 2024Apr 19, 2024

• imagej-omero

  Public
  Server- and client-side communication between ImageJ and OMERO

  Java

  •

  GNU General Public License v2.0

  •10•11•53•0•Updated Oct 5, 2023Oct 5, 2023

• imagej-omero-legacy

  Public
  ImageJ 1.x support for ImageJ-OMERO

  Java

  •

  GNU General Public License v2.0

  •1•1•0•0•Updated Jul 11, 2023Jul 11, 2023

• imagej-mesh-io

  Public
  I/O plugins for ImageJ meshes and related data structures

  Java

  •

  Other

  •1•2•1•0•Updated May 26, 2023May 26, 2023

• imagej-deprecated

  Public
  Deprecated ImageJ packages

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•1•0•0•Updated Apr 21, 2023Apr 21, 2023

• imagej-node

  Public
  ImageJ module for node.js

  JavaScript

  •

  The Unlicense

  •3•8•0•0•Updated Apr 12, 2023Apr 12, 2023

• imagej-electron-app

  Public
  [EXPERIMENTAL] Electron app embedding ImageJ + JS image visualization tools

  JavaScript

  •

  MIT License

  •3•9•0•0•Updated Apr 12, 2023Apr 12, 2023