scRNASEQ Update #31
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scRNASEQ Update #31
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Updated some things to make it display a little nicer in Vitessce:
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mccalluc
approved these changes
May 15, 2020
| @@ -27,15 +31,31 @@ def arrow_to_csv(arrow_file, csv_file): | |||
| df.to_csv(csv_file) | |||
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| def arrow_to_json(arrow_file, json_file): | |||
| def arrow_to_json(arrow_file, umap_json, leiden_json): | |||
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This handles part of #30 by outputting clustering assignments as well.
This cwl now outputs into a folder called
output(rooted wherever this is run from) 4 files for every givenname.h5adin the input directory:name.cells.jsonname.factors.jsonname.arrowname.csv@jswelling Just wanted to give you a chance to see the output structure.
@mccalluc can you give a review?
Thanks!