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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 179 repositories
  • phenocycler-pipeline Public Forked from hubmapconsortium/mibi-pipeline

    PhenoCycler segmentation pipeline

    hubmapconsortium/phenocycler-pipeline’s past year of commit activity
    Python 0 GPL-3.0 4 2 0 Updated Feb 26, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 32 Updated Feb 25, 2025
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 5 79 10 Updated Feb 25, 2025
  • rna-data-products Public
    hubmapconsortium/rna-data-products’s past year of commit activity
    Python 0 GPL-3.0 0 5 0 Updated Feb 25, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 3 89 7 Updated Feb 25, 2025
  • ccf-validation-tools Public

    HRA ASCT+B Validation Reports

    hubmapconsortium/ccf-validation-tools’s past year of commit activity
    Python 7 Apache-2.0 1 4 3 Updated Feb 25, 2025
  • mudata-validator Public

    Python package to validate Anndata objects.

    hubmapconsortium/mudata-validator’s past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated Feb 25, 2025
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 41 8 Updated Feb 25, 2025
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 95 (1 issue needs help) 0 Updated Feb 25, 2025
  • ingest-api Public
    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 16 1 Updated Feb 25, 2025
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