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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 186 repositories
  • portal-visualization Public

    Given HuBMAP Dataset JSON, creates a Vitessce configuration

    hubmapconsortium/portal-visualization’s past year of commit activity
    Python 1 MIT 1 11 5 Updated Aug 5, 2025
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 17 2 Updated Aug 5, 2025
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 6 78 10 Updated Aug 5, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 6 MIT 5 140 5 Updated Aug 5, 2025
  • hra-kg Public

    Human Reference Atlas Knowledge Graph

    hubmapconsortium/hra-kg’s past year of commit activity
    Mermaid 4 MIT 1 9 1 Updated Aug 5, 2025
  • ccf-grlc Public

    ccf-grlc: Useful SPARQL queries for HRA work + API via grlc.io

    hubmapconsortium/ccf-grlc’s past year of commit activity
    JavaScript 1 MIT 1 3 0 Updated Aug 5, 2025
  • hubmapconsortium/pan-organ-azimuth-annotate’s past year of commit activity
    Python 0 1 0 0 Updated Aug 5, 2025
  • sprm Public
    hubmapconsortium/sprm’s past year of commit activity
    Python 4 GPL-3.0 0 11 1 Updated Aug 5, 2025
  • search-api Public

    HuBMAP search service and associated pieces to create an index

    hubmapconsortium/search-api’s past year of commit activity
    Python 2 MIT 2 19 3 Updated Aug 5, 2025
  • scfind Public
    hubmapconsortium/scfind’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Aug 4, 2025