Added cwl workflow config

Dockerfile

@@ -18,9 +18,9 @@ RUN apt-get update && \
 
 COPY scripts scripts
 COPY schemas schemas
-COPY requirements.txt package.json package-lock.json .
+COPY requirements.txt package.json package-lock.json /build/
 
-RUN /bin/bash /build/scripts/setup-environment.sh /venv
+RUN ./scripts/setup-environment.sh /venv
 
 ENV PATH="/venv/bin:$PATH"
 

README.md

@@ -26,6 +26,18 @@ You can also use the docker-compose.yaml file as an example if you want to run i
 
 `docker compose run do-processor help`
 
+# Running with CWL
+
+## CWL Setup Requirements
+
+You will need to install a Python 3 and Docker (or other container system supported by CWL) and a cwl runner. The default cwl runner can be installed with Python 3's pip module like so:
+
+`python3 -m pip cwltool cwl-runner`
+
+## Running the DO Processor with CWL
+
+`cwl-runner hra-do-processor.cwl example-cwl-job.yaml`
+
 # Running Locally
 
 ## Local Setup Requirements

example-cwl-job.yaml

@@ -0,0 +1,9 @@
+do_home:
+  class: Directory
+  path: ./digital-objects
+deploy_home:
+  class: Directory
+  path: ./dist
+arguments:
+  - list
+  - --help

hra-do-processor.cwl

@@ -0,0 +1,44 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.0
+class: CommandLineTool
+
+requirements:
+  DockerRequirement:
+    dockerPull: hra-do-processor:latest
+    dockerOutputDirectory: /output
+  EnvVarRequirement:
+    envDef:
+      DO_HOME: /output/digital-objects
+      DEPLOY_HOME: /output/dist
+  InitialWorkDirRequirement:
+    listing:
+    - entryname: digital-objects
+      writable: true
+      entry: $(inputs.do_home)
+    - entryname: dist
+      writable: true
+      entry: $(inputs.deploy_home)
+
+inputs:
+  do_home:
+    type: Directory
+  deploy_home:
+    type: Directory
+  arguments:
+    type: string[]
+    inputBinding:
+      position: 1
+
+outputs:
+  do_home:
+    type: Directory
+    outputBinding:
+      glob: digital-objects
+  deploy_home:
+    type: Directory
+    outputBinding:
+      glob: dist
+  output:
+    type: stdout
+stdout: output.txt