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Adding recount3#8008

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Ishikaarora13 wants to merge 1 commit into
galaxyproject:mainfrom
Ishikaarora13:recount3
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Adding recount3#8008
Ishikaarora13 wants to merge 1 commit into
galaxyproject:mainfrom
Ishikaarora13:recount3

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@Ishikaarora13
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recount3 is for retrieving harmonized data of TCGA and GTEx.

FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

There are two labels that allow to ignore specific (false positive) tool linter errors:

  • skip-version-check: Use it if only a subset of the tools has been updated in a suite.
  • skip-url-check: Use it if github CI sees 403 errors, but the URLs work.

@nilchia
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nilchia commented May 20, 2026

@Ishikaarora13, congratulations on your first contribution to Galaxy!! 🎉

@nilchia
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nilchia commented May 20, 2026

@Ishikaarora13
This is the error:

echo 'Tool tools/recount3/recount3.xml not in changed repositories list: .shed.yml file missing'

You need to add a .shed.yml file to the recount3 directory.
You can copy one from another tool and adapt it accordingly to your tool.

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2 participants