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ksudermanclaude
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Addressed review comments
Co-Authored-By: Claude Sonnet 4 <noreply@anthropic.com>
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data_managers/data_manager_spacy_models/.shed.yml

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language models for use with the spaCy NLP annotation tool. It supports 70+
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models across 25+ languages with multi-select installation.
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homepage_url: https://spacy.io
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remote_repository_url: https://github.com/ksuderman/galaxy_tools_spacy
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remote_repository_url: https://github.com/galaxyproject/tools-iuc
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type: unrestricted
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categories:
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- Data Managers

data_managers/data_manager_spacy_models/data_manager_spacy_models.py

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#!/usr/bin/env python
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# Copyright 2006 The Galaxy Project. All rights reserved.
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"""
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Data Manager for spaCy Language Models
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data_managers/data_manager_spacy_models/data_manager_spacy_models.xml

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<tool id="data_manager_spacy_models" name="spaCy Language Models" version="3.8.11.1" tool_type="manage_data" profile="21.05">
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<tool id="data_manager_spacy_models" name="spaCy Language Models" version="3.8.11.1" tool_type="manage_data" profile="24.1">
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<description>Download and install spaCy language models</description>
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<requirements>
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<requirement type="package" version="3.12">python</requirement>

tools/spacy/.shed.yml

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It supports 25+ languages with various annotation types including tokenization, POS tagging,
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dependency parsing, named entity recognition, and more.
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homepage_url: https://spacy.io
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remote_repository_url: https://github.com/ksuderman/galaxy_tools_spacy
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remote_repository_url: https://github.com/galaxyproject/tools-iuc
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type: unrestricted
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categories:
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- Text Manipulation

tools/spacy/macros.xml

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tools/spacy/spacy_nlp.xml

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<tool id="spacy_nlp" name="spaCy NLP Annotators" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5" profile="21.05">
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<tool id="spacy_nlp" name="spaCy NLP Annotators" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5" profile="24.1">
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<macros>
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<import>macros.xml</import>
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<token name="@TOOL_VERSION@">3.8.11</token>
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<token name="@VERSION_SUFFIX@">4</token>
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</macros>
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<requirements>
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<container type="docker">ksuderman/spacy-nlp:@TOOL_VERSION@</container>

tools/spacy/spacy_process.py

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#!/usr/bin/env python
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# Copyright 2006 The Galaxy Project. All rights reserved.
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"""
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spaCy NLP Processing Script for Galaxy
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