generalize config

epigen · Feb 22, 2024 · efddf06 · efddf06
1 parent 7dee7c5
commit efddf06
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -5,9 +5,9 @@ threads: 1
 partition: 'shortq'
 
 ##### GENERAL #####
-annotation: /research/home/sreichl/projects/macroIC/config/AKsmall_mixscape_seurat_annotation.csv
-result_path: /nobackup/lab_bock/projects/macroIC/results/AKsmall/
-project_name: AKsmall
+annotation: /path/to/mixscape_seurat_annotation.csv
+result_path: /path/to/results/
+project_name: myCROPseq
 
 ##### MIXSCAPE #####
 
@@ -33,7 +33,7 @@ CalcPerturbSig:
 RunMixscape:
  mixscape_fine_mode: 'FALSE' 
  lfc_th: 0.1
- split_by_col: 'condition'
+ split_by_col: ''
  min_de_genes: 5
  min_cells: 5
  prtb_type: "KO"