increase allowed expressions in R for LDA #48

epigen · Apr 11, 2024 · 2de4ad6 · 2de4ad6
1 parent 6c06eb5
commit 2de4ad6
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/workflow/scripts/lda.R b/workflow/scripts/lda.R
@@ -7,6 +7,10 @@ library("scales")
 # source("workflow/scripts/utils.R")
 snakemake@source("./utils.R")
 
+# set expressions option to maximum to avoid "Error: protect(): protection stack overflow"
+# from here: https://stackoverflow.com/questions/32826906/how-to-solve-protection-stack-overflow-issue-in-r-studio
+options(expressions = 5e5)
+
 # inputs
 mixscape_object_path <- snakemake@input[["mixscape_object"]]