What's Changed
- Add optional run_fastqc parameter to skip FastQC/MultiQC steps by @dpark01 in #618
- Add optional resource overrides to multiqc_from_bams and allowNestedInputs to bams_multiqc by @dpark01 in #619
- assemble_denovo_metagenomic optimization by @dpark01 in #620
- Add run_rmdup option and optimize single-bam handling in classification workflows by @dpark01 in #621
- Fix resource allocation issues in downsample and multiqc tasks by @dpark01 in #622
- bump viral-core 2.5.17 to 2.5.18 by @dpark01 in #623
- viral-assemble 2.5.16.0 to 2.5.18.0 by @dpark01 in #624
- fix SIGPIPE exit code 141 in scaffold task by @dpark01 in #625
- Improve rmdup_ubam memory handling for large samples by @dpark01 in #626
- Upgrade to viral-core 2.5.20 with optimized BAM filtering by @dpark01 in #627
- Integrate bbnorm normalization and optimize resource allocation by @dpark01 in #628
- Skip indel realignment for large BAMs in align_reads task by @dpark01 in #629
Full Changelog: v2.5.16.0...v2.5.21.0
Contributors
dpark01