Intel GKL-PDHMM update #9123
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Intel GKL-PDHMM update #9123
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The jar was build using Java 1.8 and contains AVX optimized binaries for Linux hosts and not optimized binaries for Mac (Intel CPUs)
…void overflows or memory issues in oversaturated assembly regions
# Conflicts: # build.gradle
…GKL PDHMM). Added seperate timer for post processing in VectorLoglessPairPDHMM.
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This has been merged in #9152 |
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This PR is based on the dr_test_intel_pdhmm branch. It integrates Intel GKL - PDHMM into GATK for testing and validation of GKL - PDHMM correctness.
Currently, the PDHMM integration is not fully optimized and may require further refinement. Specifically:
Purpose of This PR: