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Some tests fail: Shared object "libm.so.6" not found, required by "libgkl_utils11425681626488905546.so"

Status: Open.

#9257 In broadinstitute/gatk;

· yurivict opened on Aug 27, 2025

Clustered Events filter is still not smart enough not to filter real somatic events.

Status: Open.

#9256 In broadinstitute/gatk;

· gokalpcelik opened on Aug 26, 2025

DetermineGermlineContigPloidy - Badly formed genome unclippedLoc

Status: Open.

#9251 In broadinstitute/gatk;

· stefandiederich opened on Aug 14, 2025

Do I need to run SplitNCigarReads before ASEReadCounter in GATK 4?

Status: Open.

#9248 In broadinstitute/gatk;

· francescoballesio opened on Aug 12, 2025

Feasibility of Tumor-Only Workflow for cfDNA with Mutect2

Status: Open.

#9243 In broadinstitute/gatk;

· mrymkdnz opened on Aug 1, 2025

Why CombineGVCFs so stupid to read the whole g.vcf when giving --intervals?

Status: Open.

#9238 In broadinstitute/gatk;

· xiekunwhy opened on Jul 29, 2025

Strange HaplotypeCaller behavoir and wrong AD values

Status: Open.

#9227 In broadinstitute/gatk;

· IgorUlitsky opened on Jul 14, 2025

[BUG] Upgrading Funcotator dataset to v1.8.hg38.20230908s causes loss of 'Entrez_Gene_Id' annotation

Status: Open.

#9213 In broadinstitute/gatk;

· SpikyClip opened on Jun 20, 2025

bug: Mutect2 doesn't respect provided --sequence-dictionary

Status: Open.

#9208 In broadinstitute/gatk;

· yfarjoun opened on Jun 15, 2025

MarkDuplicates not respecting --TMP_DIR

Status: Open.

#9205 In broadinstitute/gatk;

· alexnater opened on Jun 12, 2025

Trying to use NVScoreVariants fails because of python package <code>scorevariants</code> not found

Status: Open.

#9190 In broadinstitute/gatk;

· famosab opened on May 28, 2025

GenotypeGVCFs - IllegalStateException: VariantContext must contain at least one genotype with likelihoods -- did this VC exceed the max number of alt alleles?

Status: Open.

#9186 In broadinstitute/gatk;

· Honeyglitch opened on May 26, 2025