feat: migrate images from bioconda-containers#1109
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May 16, 2026 11:48
…R_BASE_IMAGE to BUILD_ENV_IMAGE The old names were misnomers - MULLED_CONDA_IMAGE refers to the create-env image used for building minimal conda environments, not mulled-docker builds. Similarly DOCKER_BASE_IMAGE is the actual build environment image. Changes: - Rename MULLED_CONDA_IMAGE -> CREATE_ENV_IMAGE with env var support - Rename DOCKER_BASE_IMAGE -> BUILD_ENV_IMAGE with env var support - Add collision check to prevent overwriting existing CONDA_IMAGE env var
Adds support for overriding the docker base image via the BUILD_ENV_IMAGE environment variable, following the same pattern used for CREATE_ENV_IMAGE.
unquoted variables and find without argument and read -r
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both patches only touch one file, so filtering was redundant
Fix BIOCONDA_UTILS_TAG extraction in create-env workflow to handle
new bash default-value syntax (${VAR:="v4.4.1"} instead of bare v4.4.1
…r dockerfile from bioconda-containers
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🤖 I have created a release *beep* *boop* --- ## [4.5.0](v4.4.1...v4.5.0) (2026-05-28) ### Features * migrate images from bioconda-containers ([#1109](#1109)) ([2b99792](2b99792)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Migrate images from bioconda-containers to bioconda-utils to bring new bioconda-utils master more in line with #1049
#1049 migrates images from bioconda/bioconda-containers to bioconda/bioconda-utils. Containers have been updated in bioconda-containers since, so this contains the new versions of bioconda-containers. After this is merged, bioconda-containers should be archived
the env vars whose names #1049 changed were not used in any repo in bioconda
since the containers and #1049 contain a lot of untested bash code, I added bash linting and formatting and fixed some minor issues the linter found
images from bioconda-containers have not been updated or built in a long time, hence some fixes to things which broke in the meantime