SBEToolbox: A Matlab Toolbox for Biological Network Analysis

We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven Graphical User Interface (GUI) of SBEToolbox enables easy access to various network and graph algorithms for programmers and non-programmers alike.

Documentation : https://promis.tamu.edu/projects/sbetoolbox/wiki/SBEToolbox_User_Manual

Reference

Konganti K, Wang G, Yang E, Cai JJ* (2013). SBEToolbox: a Matlab Toolbox for Biological Network Analysis. Evolutionary Bioinformatics 2013:9 355-362

Checkout repo :

• Stable

  • Git :

    git clone https://github.com/biocoder/SBEToolbox.git
    cd SBEToolbox
    git checkout v1.3.3
    

  • Subversion :

    svn co https://github.com/biocoder/SBEToolbox/tags/v1.3.3 SBEToolbox_v1.3.3
    

• Development

  • Git :

    git clone https://github.com/biocoder/SBEToolbox.git
    

  • Subversion :

    svn co https://github.com/biocoder/SBEToolbox/trunk
    

SBEToolbox Version 1.3.2

v1.3.2

Updating version number to tag new release

SBEToolbox Version 1.3.1

v1.3.1

No version info needed now in README.md

SBEToolbox Version 1.3

v1.3

Fixing a bug where pdb database was removed from annotation

SBEToolbox Version 1.2

v1.2

Updating README.md

SBEToolbox Version 1.1

v1.1

The Version 1.1 release of SBEToolbox as described in the manuscript …