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COPDGene Dataset
Sumedha Singla edited this page Oct 10, 2019
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└───Patient-Id
│ └───Phase-1
│ | | └───DICOM
│ | | └───Raw
│ | | | | .nhdr [fileDB_PhaseI_originalFiles_INSP/EXP.csv]
│ | | | | _partialLungLabelMap.nhdr
│ | | └───Isotropic
│ | | | | _BSplineIso1.0mm.nii.gz [fileDB_PhaseI_niiConvert_Iso1.0mm_BSpline_INSP/EXP.csv]
│ | | | | _partialLungLabelMapBSpline_Iso1.0mm.nii.gz
│ | | | | _BSplineIso1.5mm.nii.gz [fileDB_PhaseI_niiConvert_Iso1.5mm_BSpline_INSP/EXP.csv]
│ | | | | _partialLungLabelMapBSpline_Iso1.5mm.nii.gz
│ | | └───SuperVoxels
│ | | | | _BSplineIso1.0mm_SuperVoxel_Param30mm.nii.gz [fileDB_superVxl_Iso1.0mm_BSpline_INSP/EXP_Param30.csv]
│ | | | | _BSplineIso1.0mm_sigma_smooth5.0_max_band5_nTheta16_nPhi16_FourierHOG.nii.gz [fileDB_fhog_Iso1.0mm_BSpline_INSP/EXP_sigmaSmooth5.0_maxBand5_nTheta16_nPhi16.csv]
│ | | | | _BSplineIso1.0mm_SuperVoxel_Param30mm_fHOG_Hist_Features.csv.gz [fileDB_fhogHistFeatures_Iso1.0mm_BSpline_INSP/EXP_numSP30mm.csv]
│ | | _Iso1.5mm_SuperVoxel_Param30mm.nii.gz [fileDB_superVxl_Iso1.5mm_BSpline_INSP/EXP_Param30.csv]
│ | | | | _Iso1.5mm_FourierHOG.nii.gz [fileDB_1.5_FourierHOG_features.csv]
│ | | | | _Iso1.5mm_FourierHOG_superVoxel.nii.gz [fileDB_1.5_FourierHOG_superVoxel.csv]
│ | | | | └───featureFiles
│ | | | | | └───HarilickFeatures
│ | | | | | | | _BSpline_Iso1.0mm_SuperVoxel_Param30mm_harilick_setting1.csv.gz [fileDB_harilick_Iso1.0mm_INSP/EXP_numSP30mm_setting1_featureFiles.csv]
│ | | | | | └───siftFeatures
│ | | | | | | | _COPD_siftFeatures.key [fileDB_keyPoint_INSP/EXP.csv]
│ | | | | | └───Patches
│ | | | | | | | _Iso1.5mm_Patches.csv.gz [fileDB_fHOG_Hist_Patches_INSP/EXP.csv]
│ | | | | | └───FourierHOG_Hist
│ | | | | | | | _BSpline_Iso1.0mm_SuperVoxel_Param30mm_fHOG_Hist_Features.csv.gz [fileDB_fHOG_Hist_Param30mm_INSP/EXP.csv]
│ | | | | | | | _Iso1.5mm_SuperVoxel_Param30mm_fHOG_Hist_Features.bin [fileDB_fHOG_Hist_Param30mm_iso_1.5_INSP/EXP.csv]
│ | | | | | | | _Iso1.5mm_SuperVoxel_Param40mm_fHOG_Hist_Features.bin [fileDB_fHOG_Hist_Param40mm_iso_1.5_INSP/EXP.csv]
│ | | | | | | | _Iso1.5mm_SuperVoxel_Param50mm_fHOG_Hist_Features.bin [fileDB_fHOG_Hist_Param50mm_iso_1.5_INSP/EXP.csv]
│ | | | | | | | _Iso1.5mm_SuperVoxel_Param60mm_fHOG_Hist_Features.bin [fileDB_fHOG_Hist_Param60mm_iso_1.5_INSP/EXP.csv]
│ | | | | | | | _Iso1.5mm_SuperVoxel_Param70mm_fHOG_Hist_Features.bin [fileDB_fHOG_Hist_Param70mm_iso_1.5_INSP/EXP.csv]
│ | | | | | | | _Iso1.5mm_FourierHOG.bin [fileDB_fHOG_Hist_iso_1.5_INSP/EXP.csv]
│ | | | | └───monoSLIC
│ | | | | | _Iso1.5mm_SuperVoxel_numSP-800.nii.gz [fileDB_numSP-800.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_numSP-700.nii.gz [fileDB_numSP-700.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_numSP-600.nii.gz [fileDB_numSP-600.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_numSP-500.nii.gz [fileDB_numSP-500.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_numSP-400.nii.gz [fileDB_numSP-400.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_numSP-300.nii.gz [fileDB_numSP-300.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_Param70mm.nii.gz [fileDB_Param70mm.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_Param60mm.nii.gz [fileDB_Param60mm.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_Param50mm.nii.gz [fileDB_Param50mm.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_Param40mm.nii.gz [fileDB_Param40mm.csv]
│ | | | | | _Iso1.5mm_SuperVoxel_Param30mm.nii.gz [fileDB_Param30mm.csv]
│ | | └───ClinicalPatches
│ | _regionAndTypeIndices_texture.csv [fileDB_EmphysemaClassificationRegionAndTypeIndices.csv]
│ | | └───LobeSegmentation [fileDB_lobeSegmentation.csv]
│ └───Phase-2