Making Protein folding accessible to all!

Biomolecular simulation trajectory/data analysis.

A comprehensive macromolecular library

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

Genome modeling and design across all domains of life

Foldseek enables fast and sensitive comparisons of large structure sets.

MMseqs2: ultra fast and sensitive search and clustering suite

Biological foundation modeling from molecular to genome scale

A machine learning compiler for GPUs, CPUs, and ML accelerators

The Python programming language

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

CUDA Templates for Linear Algebra Subroutines

Dive into CPython internals, trying to illustrate every detail of CPython implementation

Tensors and Dynamic neural networks in Python with strong GPU acceleration

Janus-Series: Unified Multimodal Understanding and Generation Models

SGLang is a fast serving framework for large language models and vision language models.

A high-throughput and memory-efficient inference and serving engine for LLMs

Fully open reproduction of DeepSeek-R1

Message Passing Neural Networks for Molecule Property Prediction

PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Train a quantum computer the same way as a neural network.

Open source code for AlphaFold 2.

WebGL accelerated JavaScript molecular graphics library

Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.