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[GENFI] Converter improvements#909

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NicolasGensollen merged 32 commits intoaramis-lab:devaramis-lab/clinica:devfrom

MatthieuJoulot:update-genfiMatthieuJoulot/clinica:update-genfiCopy head branch name to clipboard

May 11, 2023

Commits

Commits on Apr 13, 2023

• Enhance verbosity

  MatthieuJoulot

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  097f8b1

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Commits on Apr 17, 2023

• convert all runs

  MatthieuJoulot

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  1c2f673

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Commits on Apr 18, 2023

• handle parts of dwi to get them converted

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  35de330

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Commits on Apr 20, 2023

• Handling of philips dwi

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  0a7167e

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• cleanup 1

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  5739891

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• rename variables for clarity

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  d3d674c

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• add docstrings

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  9c834b0

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Commits on Apr 21, 2023

• Add some more documentation to compute_philips_parts

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  bfb59f8

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Commits on Apr 24, 2023

• Apply suggestion from review

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  4de1e76

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• apply helper function as suggested

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  ee2bb46

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• Update clinica/iotools/converters/genfi_to_bids/genfi_to_bids_utils.py

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  7a5b5e8

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• Merge branch 'dev' into update-genfi

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  0d33f59

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Commits on Apr 25, 2023

• Apply suggestions from code review

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  bfc45bd

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• update _compute_scan_sequence_number

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  be180a9

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• Merge remote-tracking branch 'origin/update-genfi' into update-genfi

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  2a9f268

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• apply suggestions

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  13429f3

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• modify merge_diffusion_philips

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  97563b6

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• update unit-test

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Commits on Apr 26, 2023

• Replace pd.NA by np.nan for unit-tests to work

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  0705884

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• build unit-test for compute_runs

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  679ca08

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• Add more unit-tests

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  004f9e6

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• Apply suggestions from code review

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  dd3eb62

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• handle PhilipsDWI better

  MatthieuJoulot

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  b3f1d5c

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• handle PhilipsDWI better

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  0b9d6c3

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• split function

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  019cdc0

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• change unit test following the suggestion

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  d80de71

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Commits on Apr 27, 2023

• apply suggestion from code review

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  57007d4

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• Apply suggestions from code review

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  7b0233f

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• correct error from suggestion

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  5a92f1d

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• Add documentation

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Commits on May 11, 2023

• Apply suggestions from code review

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• correct format

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