Skip to content

Issues: aomlomics/tourmaline

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

41 Open 36 Closed
41 Open 36 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Output a yaml report on bioinformatics that matched edna_checklist Version 2
#157 opened Nov 8, 2024 by ksilnoaa
1
dada_stats not printing in a filtered run V1
#156 opened Nov 7, 2024 by ksilnoaa
Print out details on samples that are filtered out by dada2 Version 2
#155 opened Oct 31, 2024 by ksilnoaa
@ksilnoaa
Add functionality for Tronko taxa assignment Version 2
#154 opened Sep 24, 2024 by ksilnoaa
Incorporate filtering capabilities to V2 Version 2
#153 opened Sep 18, 2024 by ksilnoaa
How to prevent Snakemake from re-running rules when their output is already present
#152 opened Sep 18, 2024 by lukenoaa
Write script to iterate through parameters and do multiple Tourmaline runs
#151 opened Sep 13, 2024 by ksilnoaa
Try out V2 workfllow with newest qiime2 version.
#150 opened Sep 13, 2024 by ksilnoaa
Write rules for dada2 SE and deblur
#149 opened Sep 13, 2024 by ksilnoaa
Incorporate BLCA from Anacapa as a taxonomy option
#148 opened Sep 13, 2024 by ksilnoaa
Test Jupyter notebooks with current Tourmaline notebook, updated package commands
#142 opened Aug 13, 2024 by ksilnoaa
1
Create single stats file for sample step
#137 opened Jul 8, 2024 by ksilnoaa
Include script to demultiplex raw reads by sample barcodes and marker
#136 opened Jul 8, 2024 by ksilnoaa
Update fastqc_per_base_sequence_quality_dropoff.py Version 2
#135 opened Jul 8, 2024 by ksilnoaa
2
Tourmaline initial set-up in v2
#134 opened Jul 1, 2024 by ksilnoaa
1
Installing multiqc with Rosetta running
#127 opened Jun 16, 2024 by lukenoaa
User-provided file path for reference database/classifier
#126 opened Apr 26, 2024 by lukenoaa
1
Tourmaline 2.0 mega-issue
#125 opened Apr 23, 2024 by lukenoaa
Add rescript qiime plugin to Tourmaline Docker
#124 opened Apr 11, 2024 by ksilnoaa
Check for metadata beta_group_column prior to diversity step, not at beginning
#123 opened Mar 26, 2024 by ksilnoaa
Check comments/instructions about filtering
#119 opened Mar 5, 2024 by lukenoaa
Documentation updates
#118 opened Feb 5, 2024 by lukenoaa
Add code guidance to export outputs to phyloseq
#116 opened Nov 15, 2023 by ksilnoaa
Make the diversity step optional enhancement New feature or request
#115 opened Nov 15, 2023 by ksilnoaa
Update qiime2 osx/linux install instructions
#114 opened Oct 25, 2023 by ksilnoaa
ProTip! Follow long discussions with comments:>50.