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@aomlomics

AOML 'Omics

Official GitHub organization of the AOML 'Omics program. AOML is a federal research laboratory of the National Oceanic and Atmospheric Administration (NOAA).

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  1. tourmaline tourmaline Public

    Amplicon sequence processing workflow using QIIME 2 and Snakemake

    Python 43 19

  2. mitohelper mitohelper Public

    Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

    Python 18 8

  3. tutorials tutorials Public

    Tutorials for data science and bioinformatics

    Jupyter Notebook 10 5

  4. labelmaker labelmaker Public

    Printable QR labels for samples

    Python 7 8

  5. omics-data-management omics-data-management Public

    Previous guide to omics data management, including NOAA Omics Data Management Plan.

    7 1

  6. edna2obis edna2obis Public

    Forked from iobis/dataset-edna

    Code to convert eDNA metabarcoding data to Darwin Core for OBIS

    Jupyter Notebook 5 1

Repositories

Showing 10 of 20 repositories
  • opal Public
    aomlomics/opal’s past year of commit activity
    Jupyter Notebook 1 0 1 0 Updated Nov 15, 2024
  • mitohelper Public

    Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

    aomlomics/mitohelper’s past year of commit activity
    Python 18 8 0 0 Updated Nov 12, 2024
  • tourmaline Public

    Amplicon sequence processing workflow using QIIME 2 and Snakemake

    aomlomics/tourmaline’s past year of commit activity
    Python 43 BSD-3-Clause 19 41 0 Updated Nov 8, 2024
  • protocols Public

    Protocols used by AOML Omics labs, following the BeBOP-OBON standard

    aomlomics/protocols’s past year of commit activity
    0 2 10 1 Updated Oct 23, 2024
  • seusmbon Public
    aomlomics/seusmbon’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 18, 2024
  • labelmaker Public

    Printable QR labels for samples

    aomlomics/labelmaker’s past year of commit activity
    Python 7 8 1 0 Updated Sep 2, 2024
  • gomecc Public

    Input files and data analysis for NOAA GOMECC-4 DNA project.

    aomlomics/gomecc’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 31, 2024
  • sase Public
    aomlomics/sase’s past year of commit activity
    C++ 0 CC-BY-4.0 0 0 0 Updated May 8, 2024
  • tutorials Public

    Tutorials for data science and bioinformatics

    aomlomics/tutorials’s past year of commit activity
    Jupyter Notebook 10 BSD-3-Clause 5 1 0 Updated May 3, 2024
  • edna2obis Public Forked from iobis/dataset-edna

    Code to convert eDNA metabarcoding data to Darwin Core for OBIS

    aomlomics/edna2obis’s past year of commit activity
    Jupyter Notebook 5 MIT 3 4 0 Updated Apr 29, 2024
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