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Run snakemake pipeline using Github action
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dhatribadri authored Jan 21, 2025
1 parent fffbbc2 commit 93457d1
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion .github/workflows/test_pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -148,6 +148,6 @@ jobs:
# stagein: ./mconfig --without-suid && \
# make -C ./builddir && \
# make -C ./builddir install
task: 'containerize'
show-disk-usage-on-error: true
args: '--cores 4 --use-conda --use-singularity --conda-cleanup-pkgs cache -j 999 --conda-frontend conda --configfile .test/config/config.yaml --latency-wait 1000'
#run: echo "🍏 This job's status is ${{ job.status }}."

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