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Add tests directory and GitHub Actions workflow for CI
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name: Test-QCD-Pipeline | ||
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on: | ||
push: | ||
branches: | ||
- main | ||
pull_request: | ||
branches: | ||
- main | ||
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jobs: | ||
test: | ||
runs-on: ubuntu-latest | ||
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steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v2 | ||
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- name: Set up Python | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: '3.10' | ||
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- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install pytest snakemake | ||
- name: Install Singularity | ||
run: | | ||
sudo apt-get update | ||
sudo apt-get install -y singularity-container | ||
- name: Run Snakemake tests | ||
run: | | ||
pytest test_pipeline.py | ||