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Add tests directory and GitHub Actions workflow for CI
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dhatribadri committed Oct 30, 2024
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37 changes: 37 additions & 0 deletions .github/workflows/test.yml
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name: Test-QCD-Pipeline

on:
push:
branches:
- main
pull_request:
branches:
- main

jobs:
test:
runs-on: ubuntu-latest

steps:
- name: Checkout repository
uses: actions/checkout@v2

- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.10'

- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pytest snakemake
- name: Install Singularity
run: |
sudo apt-get update
sudo apt-get install -y singularity-container
- name: Run Snakemake tests
run: |
pytest test_pipeline.py

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