Update test_pipeline.yml to include singularity flag instead of appta…

…iner
Snitkin-Lab-Umich · Jan 21, 2025 · 06dbb58 · 06dbb58
1 parent 4f27765
commit 06dbb58
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/test_pipeline.yml b/.github/workflows/test_pipeline.yml
@@ -91,7 +91,7 @@ jobs:
         run: |
           source $CONDA/bin/activate
           conda activate qcd_env_test
-          snakemake -s QCD.smk -p --use-conda --use-apptainer --conda-frontend conda --configfile .test/config/config.yaml --latency-wait 1000 --cores 4 
+          snakemake -s QCD.smk -p --use-conda --use-singularity --conda-frontend conda --configfile .test/config/config.yaml --latency-wait 1000 --cores 4 
         # uses: snakemake/[email protected]
         # with:
         #   directory: '.'