Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

DOC: Add population average FreeSurfer parcellation info to README #4

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

DOC: Add population average FreeSurfer parcellation info to README #4

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 6 additions & 2 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -24,14 +24,18 @@ This Github repository provides an anatomically curated white matter atlas to en
- Drag and drop the selected mrml file onto 3D Slicer for visualization.
- Note: Use the Models module in 3D Slicer to visualize each individual fiber cluster, as described above.

### 1.3. Population mean T1/T2/b0 images
### 1.3. Population mean T1/T2/b0 images and FreeSurfer parcellation

For anatomical reference, we provide the atlas population mean T1/T2/b0 images. These images are computed by transforming the T1/T2/b0 images of the 100 HCP-atlas subjects (included for the atlas generation) into the atlas space.
For anatomical reference, we provide the atlas population MRI mean T1/T2/b0 and FreeSurfer parcellation images. The MRI
images are computed by transforming the T1/T2/b0 images of the 100 HCP-atlas subjects (included for the atlas
generation) into the atlas space. The FreeSurfer parcellation is computed using a majority vote strategy out of the
individual subjects' FreeSurfer parcellations in the atlas space.

- Download the following images:
- [100HCP-population-mean-T1.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-T1.nii.gz?download=1), ~40MB
- [100HCP-population-mean-T2.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-T2.nii.gz?download=1), ~40MB
- [100HCP-population-mean-b0.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-b0.nii.gz?download=1), ~15MB
- [100HCP-population-mean-fs_wmparc.nii.gz](https://zenodo.org/record/8082481/files/100HCP-population-mean-wmparc.nii.gz?download=1), ~845kB
- Drag and drop one image (or multiple images) onto 3D Slicer for visualization.

## 2. Download the ORG Atlas for Subject-specific Tractography Parcellation
Expand Down