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--input (babs init) --> --datasets, based on XCP-D, QSIPrep, etc. We can also change the pattern from <name> <path> to <name>=<path> to match how those BIDS Apps work.
--list_sub_file (babs init) --> I'm not sure what the name should be, but it seems like we should be accepting a participants TSV file with participant_id and session_id instead of a CSV with sub_id and ses_id.
--container_ds and --container_name (babs init) --> --container. We have --input set up as pairs of names and paths, so it seems weird to not do that with the containers too. I'd have it as --container <name>=<path>.
Summary
Many of the BABS parameters, such as
--where_project
, are kind of clunky and nonstandard across other packages, like datalad or BIDS Apps.The text was updated successfully, but these errors were encountered: