Update tpm from counts #344
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…, and out_file. Also, detects non-RNA counts data by exculding cols that contain dtype str
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Reviewed and tested, this is working great - no issues so I'll go ahead and merge. |
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This PR is related to issue #338 . Some variables such as:
were hard coded. Changed script to take arguments for these variables. These args default to the ones that work for BeatAML so that GetBeatAML.py script still works. Also edited GetBeatAML.py to call the tpmFromCounts script with an out file name argument.