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48 Open 186 Closed
48 Open 186 Closed
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Issues list

review omics data assignment for cell line data
#343 opened Mar 27, 2025 by sgosline
@jjacobson95
implement function arguments to Dataset.format that triggers removal of NA values in the returned DFs enhancement New feature or request
#340 opened Mar 26, 2025 by ymahlich
@ymahlich
tpmFromCounts.py hard coded
#338 opened Mar 26, 2025 by alexandriai168
1
@alexandriai168
update documentation page to describe creation of datasets
#337 opened Mar 26, 2025 by sgosline
@RubyFore @alexandriai168
Import Novartis/CDPM PDX data into Coderdata new data Request for additional data to be added
#335 opened Mar 25, 2025 by sgosline
@sgosline
python code for mapping copy numbers to genes
#334 opened Mar 19, 2025 by alexandriai168
@alexandriai168
copy number cdc
#333 opened Mar 17, 2025 by alexandriai168
2 tasks
@alexandriai168
transcriptomics - cdc data
#331 opened Mar 17, 2025 by alexandriai168
2 of 3 tasks
@alexandriai168
Build test code that leverages coderdata to evaluate linear model prediction of drug response
#330 opened Mar 5, 2025 by sgosline
@ymahlich
update docs documentation Improvements or additions to documentation
#329 opened Mar 5, 2025 by ymahlich
@ymahlich
Consider adding boolean to determine if ec50 is valid enhancement New feature or request
#325 opened Feb 20, 2025 by sgosline
@sgosline
pass drug_descriptors (contains mordred descriptors) to consecutive build runs for datasets bug Something isn't working 'build' update enhancement New feature or request
#323 opened Feb 5, 2025 by ymahlich
@jjacobson95
Train_test_validate function does not work for nci60 dataset bug Something isn't working package
#322 opened Feb 4, 2025 by jjacobson95
@jjacobson95
1
discrepancies in mordred values for the same improve_drug_id across different datasets invalid This doesn't seem right
#321 opened Feb 4, 2025 by ymahlich
1
unexpected data in *_drugs.tsv invalid This doesn't seem right
#319 opened Feb 3, 2025 by ymahlich
2
Transition print() statements in API to logging module enhancement New feature or request
#317 opened Jan 30, 2025 by ymahlich
beataml mutations follow different format than mutations from Broad/Sanger
#315 opened Jan 30, 2025 by ymahlich
Multiple Documentation Updates documentation Improvements or additions to documentation enhancement New feature or request
#313 opened Jan 27, 2025 by jjacobson95
6 tasks
2
Download Function in Package Could be Multi-Threaded enhancement New feature or request package
#312 opened Jan 27, 2025 by jjacobson95
Add NCI60 omics dataset to CoderData new data Request for additional data to be added
#306 opened Jan 21, 2025 by sgosline
@sgosline
Dataset.genes not "dataset specific" invalid This doesn't seem right question Further information is requested
#304 opened Jan 21, 2025 by ymahlich
2
Evaluate Ginkgo functional data to see if it's usable new data Request for additional data to be added
#300 opened Jan 16, 2025 by sgosline
@sgosline
preparation wrapper script for IMPROVE enhancement New feature or request
#299 opened Jan 16, 2025 by ymahlich
1
@ymahlich
4
Clean up / Migrate Code in Scripts enhancement New feature or request
#296 opened Jan 15, 2025 by jjacobson95
@jjacobson95
Update cell line data to use orcestra-downloader enhancement New feature or request
#287 opened Jan 3, 2025 by sgosline
1
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