Fix spectra skipping and add min_n_peaks option #265
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Skips spectra with fewer than min_n_peaks (min_n_peaks=20 by default) and adds the corresponding config option. Fixes #264
This solution is a bit hacky and discards spectra at the batching stage but I think the existing functionality for skipping spectra was buggy to begin with: it only replaces the spectra to be skipped with dummy spectra and runs the model on those dummies so that we still get predictions for them. Am I missing something, @bittremieux @wfondrie?
TODOs: