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52 followers · 67 following
  • The University of Melbourne
  • Melbourne, Australia

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Highlights

  • Pro

Organizations

@COMBINE-Canberra @bioconda

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Adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

  • Adamtaranto/TRF2GFF - Convert Tandem Repeat Finder dat file output into gff3 format (today)
  • Adamtaranto/teloclip - A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (today)
  • tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (today)
  • oxli-bio/oxli - k-mers and the like (2 days ago)
  • Adamtaranto/TE-splitter - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons. (4 weeks ago)

🔭 Latest releases I've contributed to

GitHub Stats GitHub Streak

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  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 35 4

  2. TIRmite TIRmite Public

    Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

    Python 6 3

  3. deRIP2 deRIP2 Public

    Predict progenitor sequence of fungal repeat families by correcting for RIP-like mutations and cytosine deamination events. Mask RIP or deamination events from alignments.

    Python

  4. TRF2GFF TRF2GFF Public

    Convert Tandem Repeat Finder dat file output into gff3 format

    Python 23 3