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  • 230k-dendrite-tracing Public

    This is a repo for experimental codes on large-scale reconstruction of 230k mouse neurons.

    MIT License Updated Oct 31, 2023

  • attractor-langchain Public

    MIT License Updated Jun 16, 2023

  • BatchLabel Public

    A Vaa3D plugin, can read batches of 3D block and images and their swc(optional), let users label them with different tags, and export a table. This is useful for generate training and testing datas…

    C++ MIT License Updated Jun 27, 2020

  • BloodGlucoseMLData Public

    Forked from DeltSystem32/Diabetes-Glucose-Datasets

    Publicly available datasets for blood glucose prediction. This public repository is intended to facilitate data import to projects.

    Updated Mar 14, 2020

  • ccf-db Public archive

    JavaScript MIT License Updated Jun 8, 2021

  • ccf-db-backend Public archive

    Python MIT License Updated Jun 8, 2021

  • ccf-model-gen Public

    Scripts for generating draco models based on CCFv3 annotation.

    Python MIT License Updated Jun 4, 2021

  • cellSAM Public

    Forked from vanvalenlab/cellSAM

    Codebase for "A Foundation Model for Cell Segmentation"

    Jupyter Notebook Other Updated Aug 2, 2024

  • fmcd-docker Public archive

    Functional mouse connectome database for docker

    Shell MIT License Updated Oct 26, 2023

  • gs-neuron-check Public

    Python MIT License Updated Aug 5, 2024

  • insitu Public

    Python 1 MIT License Updated Oct 8, 2020

  • insitu-GMM-on-umap Public

    Apply insitu Gaussian mixture model segmentation on umap results.

    Jupyter Notebook MIT License Updated Feb 15, 2025

  • insitu-tools Public

    A set of command line tools that find and compare In situ expression patterns between mRNA expression images.

    Python 1 MIT License Updated Aug 5, 2024

  • InterpretableSCRNA Public

    1 GNU General Public License v3.0 Updated Aug 19, 2021

  • itk-vtk-lib-lung-segment-demo Public

    Medical Image Processing Coursework, BME, SEU

    C++ MIT License Updated Jun 5, 2021

  • neuro-morpho-spectrum Public

    Applying spectrum analysis methods on neuron morphology.

    MIT License Updated Dec 16, 2021

  • NIEND Public

    Jupyter Notebook 1 MIT License Updated Aug 5, 2024

  • Order-independent-rendering-wrapper-on-threejs Public

    A simple class that wraps your renderer and provide basic oit rendering for your opaque and transparent objects.

    transparent-objects oit-rendering
    JavaScript 1 1 MIT License Updated Mar 29, 2021

  • pbs-bash-v3d-app2 Public

    Scripts for APP2 auto-tracing on a PBS server

    Shell MIT License Updated Feb 10, 2022

  • r3f-swc-viewer Public

    Created with CodeSandbox

    JavaScript 2 Updated Aug 5, 2024

  • spikeinterface Public

    Forked from SpikeInterface/spikeinterface

    A Python-based module for creating flexible and robust spike sorting pipelines.

    Python MIT License Updated Mar 22, 2025

  • SuperCT Public

    Forked from weilin-genomics/SuperCT

    This project is for the development of a supervised classifier of cell typing based on the single-cell RNAseq digital expression profiles

    Python Updated Feb 15, 2025

  • tc-project Public

    A simple course assignment

    JavaScript MIT License Updated Oct 25, 2021

  • TeraQC Public archive

    Whole Brain image quality check based on TeraConverted image blocks.

    Jupyter Notebook Apache License 2.0 Updated Mar 12, 2022

  • TeraStitcher Public

    Forked from abria/TeraStitcher

    A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

    C++ Other Updated Oct 27, 2018

  • the-littlest-jupyterhub Public

    Forked from jupyterhub/the-littlest-jupyterhub

    Simple JupyterHub distribution for 1-100 users on a single server

    Python BSD 3-Clause "New" or "Revised" License Updated Dec 3, 2019

  • tip_label_widget Public

    Python MIT License Updated Jun 27, 2020

  • TracingAlloy Public

    Apache License 2.0 Updated Feb 18, 2022

  • traefik Public

    Forked from traefik/traefik

    The Cloud Native Edge Router

    Go MIT License Updated Dec 3, 2019

  • v3d_external Public

    Forked from Vaa3D/v3d_external

    www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200

    C++ Other Updated Jan 8, 2022