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Add a prune statement to the flux repository test (#1967)
## Description This adds the new prune command to the flux test as well to reduce disk pressure. ## Related Issue Fixes #N/A ## Type of change - [ ] Bug fix (non-breaking change which fixes an issue) - [ ] New feature (non-breaking change which adds functionality) - [X] Other (security config, docs update, etc) ## Checklist before merging - [X] Test, docs, adr added or updated as needed - [X] [Contributor Guide Steps](https://github.com/defenseunicorns/zarf/blob/main/CONTRIBUTING.md#developer-workflow) followed
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