update gha

.github/workflows/R-check.yml

@@ -1,48 +1,106 @@
 on: [push, pull_request]
 
 name: R-check
-  
+
 jobs:
-  check:
-    runs-on: ${{ matrix.config.os }}
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
-
-    strategy:
-      fail-fast: false
-      matrix:
-        config:
-        - {os: windows-latest, r: 'release', args: "--no-manual"}
-        - {os: macOS-latest, r: 'release', args: "--no-manual"}
-        - {os: ubuntu-latest, r: 'release', http-user-agent: 'release', args: "--no-manual"}
+  linux_check: 
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, 'skip linux')"
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      CRAN: ${{ matrix.config.cran }}
-      GITHUB_PAT: ${{secrets.GH_PAT}}
-
+      GITHUB_PAT: ${{secrets.GITHUB_TOKEN}}
+      R_KEEP_PKG_SOURCE: yes
     steps:
-      - uses: actions/checkout@v2
-
-      - uses: r-lib/actions/setup-tinytex@master
-        if: contains(matrix.config.args, 'no-manual') == false
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
+      - uses: actions/checkout@v3
+
       - uses: r-lib/actions/setup-r@v2
         with:
-          r-version: ${{ matrix.config.r }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
-
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+  winos_check: 
+    runs-on: windows-latest
+    if: "!contains(github.event.head_commit.message, 'skip winos')"
+    env:
+      GITHUB_PAT: ${{secrets.GITHUB_TOKEN}}
+      R_KEEP_PKG_SOURCE: yes
+    steps:
+      - uses: actions/checkout@v3
+      - uses: r-lib/actions/setup-pandoc@v2  
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck
           needs: check
-
+
+      - uses: r-lib/actions/check-r-package@v2
+  osx-check:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck
           needs: check
-                  
+
       - uses: r-lib/actions/check-r-package@v2
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: covr::codecov(quiet = FALSE)
+        shell: Rscript {0}
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          upload-snapshots: true
+          extra-packages: local::.
+
+      - name: covrpage-setup
+        run: pak::pkg_install(c('hadley/emo','yonicd/covrpage@actions'), ask = FALSE)
+        shell: Rscript {0}
+
+      - name: covrpage
+        if: github.ref == 'refs/heads/master'
+        run: |
+          git config --local user.email "[email protected]"
+          git config --local user.name "GitHub Actions"
+          Rscript -e 'covrpage::covrpage_ci()'
+          git commit tests/README.md -m 'Update tests/README.Rmd' || echo "No changes to commit"
+          git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{ github.ref }} || echo "No changes to commit"
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
+