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yukt wants to merge 58 commits intoxqwen:masterxqwen/dap:masterfrom yukt:rpackageyukt/dap:rpackageCopy head branch name to clipboard

+10,465-129

Commits

Commits on May 13, 2019

• fix openmp compatibility

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  becf992

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• clean up warnings

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  c2bf8ce

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• Update README.md

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  97afe2c

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• make OpenMP optional

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  4eda293

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• Merge branch 'rpackage' of https://github.com/yukt/dap into rpackage

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  5e63536

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• clean up

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• Update README.md

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  b2dffc4

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• mute stdout running in r

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Commits on May 14, 2019

• adjust stdout for R

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  e3350d9

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• optimize nmodel_vec

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  f474b5b

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• separate output

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  3b56bf3

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• clean up sort_snp_vec

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  cf97ac1

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• setup r package

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  8d8fd85

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• clean up cluster vectors in fine map

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  9f1fd9f

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• finish up r-package option 0

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  52ec3d6

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• add options

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  30e0ab4

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• support read in sbams in R

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  875441e

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Commits on May 15, 2019

• accept data frame

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  dc1eb8a

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• improve R log output

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  400a8ab

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• add summary function for dap

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  a092019

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• add summary function for dap

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  1b9df07

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• add summary function for dap

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  168346d

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• add top models to summary

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  c000863

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Commits on May 16, 2019

• add documentations

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  94d2ec9

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• add license and data

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  346a321

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• add citations

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  9950750

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• add quiet mode and README

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  4aa9f67

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• add quiet mode and README

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  7dbcf5b

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• fix bugs

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  b6aaf54

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• update README and CITATION

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  committed
  35d7847

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• update README

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  fba7da8

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• fix bugs

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  84b75ac

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Commits on May 23, 2019

• try add openmp flag

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  committed
  140b008

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• fix openmp bug

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  d125115

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• inactive fopenmp

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  7011c5e

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Commits on Jul 29, 2019

• update structure of return object

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  70e6241

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• update structure of return object

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  4c2d17d

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• implement option 1 --scan

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  committed
  cdf5d84

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• add twas option to dap function

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  3166100

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• remove cump

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  0f5832f

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Commits on Aug 9, 2019

• fix print.summary.dap bug

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  4450f3f

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Commits on Aug 12, 2019

• finish twas

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  a13c652

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• coef->weight

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  915c911

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• add data

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  c0c0631

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• dap.ss

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  967a37c

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• optimize main.cpp

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  b74d526

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• polish doc

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  bfdd700

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Commits on Aug 13, 2019

• finish dap.z

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Commits on Aug 14, 2019

• merge R-package/src with /src

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  committed
  3f13dce

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• fix bug in initialize zval

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  1637c4d

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• fix bug in initialize zval

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  1a228ae

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• fix bug in initialize zval

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  committed
  70e5617

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• finish extract.sbams (--dump_summary2)

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  committed
  fc7195b

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• add options to dap.z and dap.ss

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  committed
  a0b0882

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Commits on Aug 15, 2019

• small change in doc

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  committed
  42e4088

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• fix bug when prior file contains new snp

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  committed
  e3cd190

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• add prior option

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• add prior example

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